TkA01G611190 | RubberDandelionOmics

Gene overview

TkA01G611190

Reference: TK1151 Chr: Chr01 Coordinates: 154099965-154101533 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1184 bp · TkA01G611190|TK1151|cDNA

GTTTACTAATTAGTACGACGCGTACATATATATAGTCGCATGAATATATATTATACTATGCCACCCTCAGCCCCTCTCCCCCTCCACCCTTATTTTCGAATGTTCATGGCATTTAAAGATCAAAAGCTTCAGAGAGAAGAGCTTGGGTTGGTTACAGTTTGCGTCTATTTAATCATTAGTTGTTCTAAAAGTAACTAAAGGCCTAGAAATGGAGGGAGAAGGAGGGATAATGGCACCAGGGTATAGATTCTACCCAACTG...

CDS

Download CDS FASTA

771 bp · TkA01G611190|TK1151|CDS

ATGGAGGGAGAAGGAGGGATAATGGCACCAGGGTATAGATTCTACCCAACTGAAGAAGAGTTGGTCACATTCTATTTGAAGCACAAGATCCAAAAGAGTCCTGGCACCACAAGATTACTACAAGAAATCGATCGAGTCATTCCCCAATTTCATATTAATGATTTCTATCCTTGGGACCTCCCTCAATATGCGGGAGAGCGGTGTCGAGGAGACCCTGAGCAATGGTTCTTTTTCGTTCCGAGACAGGAGAATGAAGCAAG...

Protein

Download Protein FASTA

256 aa · TkA01G611190|TK1151|PROTEIN

MEGEGGIMAPGYRFYPTEEELVTFYLKHKIQKSPGTTRLLQEIDRVIPQFHINDFYPWDLPQYAGERCRGDPEQWFFFVPRQENEARGGRISRLTSSGYWKATGSPSIVYSSGNRGIGVKRTMVFYTGRAPTGKKTKWKLNEYKAFEEQHSSNTNSIPELMQELSLCRVYIKSNCLRAFDRRPSGVVIRESRTLHQTHDNGLHATTSTHLIPPSIMGRTCDDHSYVSSEEQNTNSCSIMEVMDQPLWDWEEHHNYL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G611190`
TK1151 ID	TkA01G611190
OH-1004 ID	LXL04_000446
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 89.199 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G611190

Location Chr01:154099965-154101533 (+)

Description Similar to NAC090: NAC domain-containing protein 90

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22380`	NAC domain-containing protein 90.	No verified direct reference in this release
`At3g44350`	Putative NAC domain-containing protein 61.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0133000`	Transcription activator that binds sequence-specific DNA motifs.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000446 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0045770 positive regulation of asymmetric cell division Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048103 somatic stem cell division Biological Process

GO:0048829 root cap development Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:1902584 positive regulation of response to water deprivation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G26870

ath:AT5G22380

dosa:Os03g0133000

gmx:732555

osa:4331520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.896

Rank 1 · TkA01G611190 · TK1151

Cytoplasm0.170

Rank 2 · TkA01G611190 · TK1151

Cell membrane0.059

Rank 3 · TkA01G611190 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA01G611190 · TK1151

Plastid0.015

Rank 5 · TkA01G611190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365NAM10-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G611190	`PF02365`	NAM	10	144	6.3e-34	117.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FMR3`	Arabidopsis thaliana	sp\|Q9FMR3\|NAC90_ARATH NAC domain-containing protein 90	51.600%	Swiss-Prot	High
`Q9M290`	Arabidopsis thaliana	sp\|Q9M290\|NAC61_ARATH Putative NAC domain-containing protein 61	45.700%	Swiss-Prot	Medium
`Q10S65`	Oryza sativa subsp. japonica	sp\|Q10S65\|NAC22_ORYSJ NAC domain-containing protein 22	36.700%	Swiss-Prot	Medium

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