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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G610450
Reference: TK1151 Chr: Chr01 Coordinates: 153907766-153912655 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4247 bp · TkA01G610450|TK1151|cDNA

TTTGCTTCAAATTAAGTTGGTCAATGGTTAGTTTAGATCATCAAAAATATTATTGCAAAATCGTCACTAATGAAAATCAACATATCATTAATTGTTCATGTACGTAAAAACCAAACAAATAGATTACCAATAGTCGTTACATGAACAAACGCCATCTTTAAAATGATGAAAACGGGTCGGATCTCTAACAACAAATCTCCGGCCCACAACCTTACTAACCAACTTTATAAACAAATGACAATCTCCACATACCCGTAAGT...

CDS

Download CDS FASTA

1908 bp · TkA01G610450|TK1151|CDS

ATGATTCTAGTTCTCATTCCACTTTCATCTTCTTCTTCTTCTTCATCCTCGTTGCTCAAGTTCAAACAAAAGGAATCGAACCGATTAAATCTGATCACTACCAGCCAGTCGCCCTTTACGAAGCGTGATCATTATAAACCCTTTAAATTTAATTCCGTATCTTGCTCACTCAAACTCCCTTCTTCACTCGATTCGGTTAAACCCTACGTCCAATCCGAATGGAAAACGATTGCCCAGGGCTGGATATGCAGCGCCGTTTC...

Protein

Download Protein FASTA

635 aa · TkA01G610450|TK1151|PROTEIN

MILVLIPLSSSSSSSSSLLKFKQKESNRLNLITTSQSPFTKRDHYKPFKFNSVSCSLKLPSSLDSVKPYVQSEWKTIAQGWICSAVSVYSLSKIVPIVGKFTGMMNVETLKQEGLLIGLLFLVRLVSNYLQQSFLWEASLRSVYKMRVCVFERVLQRNLGFFEGGSGKSVGDIAYRITAEASDVADTIYALLNTIVPSSLQLLAMATQMLSISPILSLVSAMVIPLMVFVNAYFGEELRETSNKANYTIAAISSYLNEVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G610450
TK1151 IDTkA01G610450
OH-1004 IDLXL04_000464
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G610450
LocationChr01:153907766-153912655 (-)
DescriptionSimilar to ABCB29: ABC transporter B family member 29, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g03910 ABC transporter B family member 29, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000464 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0055085 transmembrane transport Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0016020 membrane Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0015421 ABC-type oligopeptide transporter activity Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0034040 ATPase-coupled lipid transmembrane transporter activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT5G03910
bsu:BSU08690
bsu:BSU14330
rso:RSc2200
sat:SYN_01564
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.956
Rank 1 · TkA01G610450 · TK1151
Mitochondrion0.058
Rank 2 · TkA01G610450 · TK1151
Cytoplasm0.018
Rank 3 · TkA01G610450 · TK1151
Peroxisome0.017
Rank 4 · TkA01G610450 · TK1151
Nucleus0.013
Rank 5 · TkA01G610450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane89-340 aa
PF00004AAA180-217 aa
PF00270DEAD205-223 aa
PF01078Mg_chelatase256-290 aa
PF13173AAA_14335-354 aa
PF02463SMC_N349-599 aa
PF00931NB-ARC407-438 aa
PF00005ABC_tran408-559 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G610450PF00664ABC_membrane893401.7e-2384.4
TkA01G610450PF00004AAA1802170.02215.9
TkA01G610450PF00270DEAD2052230.4411.0
TkA01G610450PF01078Mg_chelatase2562900.04713.8
TkA01G610450PF13173AAA_143353540.1812.5
TkA01G610450PF02463SMC_N3495999.6e-0935.7
TkA01G610450PF00931NB-ARC4074380.2311.7
TkA01G610450PF00005ABC_tran4085592.3e-34119.6
TkA01G610450PF03193RsgA_GTPase4094390.02215.3
TkA01G610450PF02367TsaE4094400.04314.5
TkA01G610450PF12775AAA_74114410.1812.0
TkA01G610450PF13481AAA_254134350.03314.5
TkA01G610450PF13555AAA_294134350.2811.7
TkA01G610450PF09818ABC_ATPase4154380.09112.5
TkA01G610450PF00270DEAD4165830.4411.0
TkA01G610450PF13191AAA_164175840.001419.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZB8Arabidopsis thalianasp|Q9LZB8|AB29B_ARATH ABC transporter B family member 29, chloroplastic60.700%Swiss-ProtHigh

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