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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G609810
Reference: TK1151 Chr: Chr01 Coordinates: 153713291-153714974 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1560 bp · TkA01G609810|TK1151|cDNA

ATGGCTGTTGCTGAAATCTTTATCGGCGCATTCATCACTGTTCTGTTTGAGAAGCTAGCCTCTGCTGACTTGATCAGGCTGGCTCGATCTGCAGGAATGTATTCCGAGCTCGACAAATGGAACAACACCCTGTCCCAAATCCAAGCAGTGCTTGTTGATGCAGGTCAGAAGCACCTAAGACAGAGATCTATTCAACTATGGCTGCACAAACTCCAGCATTTAGCTTACGACATTGACGATGTTCTTGATGATTTGGCCAC...

CDS

Download CDS FASTA

1560 bp · TkA01G609810|TK1151|CDS

ATGGCTGTTGCTGAAATCTTTATCGGCGCATTCATCACTGTTCTGTTTGAGAAGCTAGCCTCTGCTGACTTGATCAGGCTGGCTCGATCTGCAGGAATGTATTCCGAGCTCGACAAATGGAACAACACCCTGTCCCAAATCCAAGCAGTGCTTGTTGATGCAGGTCAGAAGCACCTAAGACAGAGATCTATTCAACTATGGCTGCACAAACTCCAGCATTTAGCTTACGACATTGACGATGTTCTTGATGATTTGGCCAC...

Protein

Download Protein FASTA

519 aa · TkA01G609810|TK1151|PROTEIN

MAVAEIFIGAFITVLFEKLASADLIRLARSAGMYSELDKWNNTLSQIQAVLVDAGQKHLRQRSIQLWLHKLQHLAYDIDDVLDDLATEAMKRQLNEEETYATTNTSTRKVQKIIPTCCTNFTPRTIKYGHKMSSKLDEITTKLHHLVEEKNILGLISNVERGNRSSRRLEETSLVDESRIVGREGDKGALLEKLLGNESCNENVSILSIVGLGGIGKTTLAQVLYNEKKVKDQFELMAWVCVSDEFEVFNISKAIFQAVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G609810
TK1151 IDTkA01G609810
OH-1004 IDLXL04_000481
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)90.000
Protein coverage (%)TK1151 93.834 / OH-1004 31.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G609810
LocationChr01:153713291-153714974 (+)
DescriptionSimilar to RPPL1: Putative disease resistance RPP13-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14470 Potential disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051607 defense response to virus Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005657 replication fork Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex Cellular Component
GO:0000150 DNA strand exchange activity Molecular Function
KEGG gene cross-reference
ath:AT2G28560
ath:AT3G14460
ath:AT3G14470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.574
Rank 1 · TkA01G609810 · TK1151
Endoplasmic reticulum0.149
Rank 2 · TkA01G609810 · TK1151
Cytoplasm0.119
Rank 3 · TkA01G609810 · TK1151
Plastid0.081
Rank 4 · TkA01G609810 · TK1151
Lysosome / Vacuole0.066
Rank 5 · TkA01G609810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18052Rx_N10-98 aa
PF13401AAA_2230-61 aa
PF00931NB-ARC56-99 aa
PF13191AAA_1667-79 aa
PF20720nSTAND375-128 aa
PF20691TAGT79-126 aa
PF13401AAA_2285-85 aa
PF00005ABC_tran94-96 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G609810PF18052Rx_N10981.7e-1764.0
TkA01G609810PF13401AAA_2230610.01416.4
TkA01G609810PF00931NB-ARC56995.8e-2175.5
TkA01G609810PF13191AAA_1667790.005518.0
TkA01G609810PF20720nSTAND3751280.01116.1
TkA01G609810PF20691TAGT791260.02615.1
TkA01G609810PF13401AAA_2285850.01416.4
TkA01G609810PF00005ABC_tran94960.1213.7
TkA01G609810PF12731Mating_N941510.1812.6
TkA01G609810PF00931NB-ARC1091555.8e-2175.5
TkA01G609810PF13191AAA_161802490.005518.0
TkA01G609810PF00931NB-ARC1862705.8e-2175.5
TkA01G609810PF20720nSTAND32053020.01116.1
TkA01G609810PF13401AAA_222052840.01416.4
TkA01G609810PF00005ABC_tran2052290.1213.7
TkA01G609810PF00931NB-ARC2873285.8e-2175.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRR4Arabidopsis thalianasp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 137.100%Swiss-ProtMedium

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