TkA01G601970 | RubberDandelionOmics

Gene overview

TkA01G601970

Reference: TK1151 Chr: Chr01 Coordinates: 151604419-151609090 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3112 bp · TkA01G601970|TK1151|cDNA

GTGTGTGTGTGTGTGTAACCTGCTTTCGCCGGTAACCACTTGGAGCCTTTTACCGATCCATTCGGTAACAAGGGTCAATGAGTATAAACAGCTGGGGGGTTTAAGGCTTTCGTCGGGTGGTTTTCAGAGGGTTTTTGTGTTTGTTCTGGTTCACGTCCTTTTGATCATTATTATATCTCGAGGATTTGTTGAGAGAGGATTTGAAAGAAAAGAAATAAATTGGAGGAAGAGATTGCGTTTCAAACAACATTATGTGGCGA...

CDS

Download CDS FASTA

2019 bp · TkA01G601970|TK1151|CDS

ATGGTGTTGCAGAAGAGGTTAGAATATGGATTTAACGGCTATCAGGTGCCTCCAACTCCCCGGGCCGCCAGATCAGCCACGCGGAGGGTTCCATCATGGAAGAAAACTGAGGAAAATAACACCAACAATAAACCGCAAATGTGCGCATTTGATTTACTGGCGACTGTAGCCGGAAAGTTACTCCAGGAGGGCGGTGGAGAAGAACCCGAACCCGTTAAATCCGAAAAACAAACCGTAGAAGACGACCCTTCGAATGTTAA...

Protein

Download Protein FASTA

672 aa · TkA01G601970|TK1151|PROTEIN

MVLQKRLEYGFNGYQVPPTPRAARSATRRVPSWKKTEENNTNNKPQMCAFDLLATVAGKLLQEGGGEEPEPVKSEKQTVEDDPSNVNNNNNNICDQGSCNRSFFVSEIISQAPIMDPQHESYSGPSSGITVSDCSEKIPAPVPAPVPVLSVDKVKLPFSCKLDEKNSKPITNEAPKPHVVQNIDNNNNNNNNNNNTNNVKLPFRKDHHTAIGHGHGHLPLCQDNVNLVVRDDDENSSGVTRVPNKTFKPPPRIGDRRIRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G601970`
TK1151 ID	TkA01G601970
OH-1004 ID	LXL04_000582
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G601970

Location Chr01:151604419-151609090 (+)

Description Similar to TRP5: Telomere repeat-binding protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07540`	Binds specifically to the plant telomeric double-stranded DNA sequences.	No verified direct reference in this release
`At3g46590`	Binds specifically to the plant telomeric double-stranded DNA sequences.	AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro.2005 · DOI: 10.1007/s00438-004-1096-3
`At3g12560`	Binds specifically to the plant telomeric double-stranded DNA sequences.	No verified direct reference in this release
`At5g13820`	Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'.	No verified direct reference in this release
`At5g59430`	Binds specifically to the plant telomeric double-stranded DNA sequences 5'-GGTTTAG-3'.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0000781 chromosome, telomeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003691 double-stranded telomeric DNA binding Molecular Function

GO:0008301 DNA binding, bending Molecular Function

KEGG gene cross-reference

ath:AT1G07540

ath:AT3G12560

ath:AT3G46590

ath:AT5G13820

ath:AT5G59430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.979

Rank 1 · TkA01G601970 · TK1151

Cytoplasm0.065

Rank 2 · TkA01G601970 · TK1151

Cell membrane0.026

Rank 3 · TkA01G601970 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA01G601970 · TK1151

Plastid0.012

Rank 5 · TkA01G601970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23603Ubiquitin_TPR1372-439 aa

PF18036Ubiquitin_4372-440 aa

PF00249Myb_DNA-binding571-620 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G601970	`PF23603`	Ubiquitin_TPR1	372	439	6.3e-36	122.7
TkA01G601970	`PF18036`	Ubiquitin_4	372	440	0.16	12.6
TkA01G601970	`PF00249`	Myb_DNA-binding	571	620	9.7e-06	26.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6R0E3`	Arabidopsis thaliana	sp\|Q6R0E3\|TRP5_ARATH Telomere repeat-binding protein 5	46.900%	Swiss-Prot	Medium
`Q9SNB9`	Arabidopsis thaliana	sp\|Q9SNB9\|TRP2_ARATH Telomere repeat-binding protein 2	39.700%	Swiss-Prot	Medium
`Q9C7B1`	Arabidopsis thaliana	sp\|Q9C7B1\|TRP3_ARATH Telomere repeat-binding protein 3	37.700%	Swiss-Prot	Medium
`Q9FFY9`	Arabidopsis thaliana	sp\|Q9FFY9\|TRP4_ARATH Telomere repeat-binding protein 4	36.900%	Swiss-Prot	Medium
`Q8L7L8`	Arabidopsis thaliana	sp\|Q8L7L8\|TRP1_ARATH Telomere repeat-binding protein 1	37.700%	Swiss-Prot	Medium

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