Gene Card
Gene overview
cDNA / CDS / Protein Sequences
492 bp · TkA01G600670|TK1151|cDNA
ATGCTCACTTGGCGGCAGCACAGGAAGTTTTCGGACACTGCATCCAGTCATAGTGGAGGTGGAAGTGGAGGTGGTTTCACCCAACTGCCCAAGCTTTTCATAAAAATGTGTCCAGTTCCATGTTCTCATTATCCATCCTCGATTCCACCCATCTCTATATACAGAAGTGTTGATGATGATCTGTACAGAGCGGTCACTTGTTGTACGTTGATTTTAAATTGCAAACACACAGACAAAAAGAGAAATCATCCTGTTTCAGA...
492 bp · TkA01G600670|TK1151|CDS
ATGCTCACTTGGCGGCAGCACAGGAAGTTTTCGGACACTGCATCCAGTCATAGTGGAGGTGGAAGTGGAGGTGGTTTCACCCAACTGCCCAAGCTTTTCATAAAAATGTGTCCAGTTCCATGTTCTCATTATCCATCCTCGATTCCACCCATCTCTATATACAGAAGTGTTGATGATGATCTGTACAGAGCGGTCACTTGTTGTACGTTGATTTTAAATTGCAAACACACAGACAAAAAGAGAAATCATCCTGTTTCAGA...
Protein
Download Protein FASTA163 aa · TkA01G600670|TK1151|PROTEIN
MLTWRQHRKFSDTASSHSGGGSGGGFTQLPKLFIKMCPVPCSHYPSSIPPISIYRSVDDDLYRAVTCCTLILNCKHTDKKRNHPVSELPDGSGWADHKKSYRMNLTILLSGEMDVEITDFLLSAHEQDAKVPTDAKVPKTPFSTCSDLENSIIALLETFWPMY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G600670 |
|---|---|
| TK1151 ID | TkA01G600670 |
| OH-1004 ID | LXL04_019162 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 75.300 |
| Protein coverage (%) | TK1151 54.601 / OH-1004 55.634Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G600670 |
|---|---|
| Location | Chr01:151297787-151299594 (+) |
| Description | Similar to At1g27900: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0003723 RNA binding Molecular Function GO:0003724 RNA helicase activity Molecular Function GO:0004386 helicase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function |
| KEGG gene cross-reference | ath:AT1G27900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.