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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G597940
Reference: TK1151 Chr: Chr01 Coordinates: 150526315-150531487 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1496 bp · TkA01G597940|TK1151|cDNA

ATGAGAATACTCTCCTAATATAGAGTTTCCTTTCATGAAGTTTTGACGTAATCCAAAGAAGTTAGGTGATGATTTCAAGGTTATGGGTGAAGATTCTCATTTCCTATTCCTCCTATATTGTAACCTTGATACTTCTGCTTTGCATAAGGTGCTCAAACAATTCTACCAAGAAAACCTTAATGGAATCATGACTTAGAATCCAAATTGACGGTGAAAGTCCCATCTTCATCCTACAATAACCCCACAGAAATTGTCATCAA...

CDS

Download CDS FASTA

1014 bp · TkA01G597940|TK1151|CDS

ATGACTTTGTGCGCCGTCGACTCCCCCAGAGAACTCGCATGTCGCGACGGCCATGCGGCGGCGACGCTCAAGCTAATCTCCATGTTCGCCATATTTTTCACAAGCGTCGTCGGAATATCGGCACCGGTGATGCTTGCTCGTTTGTTTCACGGTAAGCCTCTATACGATAAAGCAATTTTGATCATCAAATGTTTCGCGGCGGGAGTCATTCTATCTACCTCACTTGTTCACGTGCTTCCCGACGCGTACGACGCTCTCGC...

Protein

Download Protein FASTA

337 aa · TkA01G597940|TK1151|PROTEIN

MTLCAVDSPRELACRDGHAAATLKLISMFAIFFTSVVGISAPVMLARLFHGKPLYDKAILIIKCFAAGVILSTSLVHVLPDAYDALANCQVSSHHPWKDFPFSGLITLVGVLTALLVDLTATSHVDGYSHGHGSNEVTAYTRINDSEELRKSVVEIEVMEAGEERRRLKEEEMVKMKQRMVSQVLEIGIIFHSVIIGVTMGMSQNQCTIKPLVAALAFHQIFEGMGLGGCIAQAGFKIGTTAYMCIMFSVTTPMGIMLGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G597940
TK1151 IDTkA01G597940
OH-1004 IDLXL04_032178
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)39.200
Protein coverage (%)TK1151 96.142 / OH-1004 86.932
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G597940
LocationChr01:150526315-150531487 (+)
DescriptionSimilar to IRT1: Fe(2+) transport protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30080 May play a role in the transport of zinc in the plastids. No verified direct reference in this release
At3g12750 Mediates zinc uptake from the rhizosphere. No verified direct reference in this release
At5g45105 Probably mediates zinc uptake from the rhizosphere. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0164800 Zinc transporter that may be involved in zinc uptake from the rhizosphere. No verified direct reference in this release
Os05g0472700 Zinc transporter that mediates zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant.
OsZIP5 is a plasma membrane zinc transporter in rice.2010 · DOI: 10.1007/s11103-010-9637-0
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032178 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006826 iron ion transport Biological Process
GO:0006829 zinc ion transport Biological Process
GO:0015691 cadmium ion transport Biological Process
GO:0071577 zinc ion transmembrane transport Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005385 zinc ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G31260
ath:AT2G04032
dosa:Os03g0667300
dosa:Os03g0667500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.752
Rank 1 · TkA01G597940 · TK1151
Cytoplasm0.093
Rank 2 · TkA01G597940 · TK1151
Endoplasmic reticulum0.090
Rank 3 · TkA01G597940 · TK1151
Lysosome / Vacuole0.085
Rank 4 · TkA01G597940 · TK1151
Golgi apparatus0.042
Rank 5 · TkA01G597940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02535Zip22-334 aa
PF06979TMEM7023-37 aa
PF02417Chromate_transp25-85 aa
PF30687Nuo9p530-46 aa
PF06979TMEM7056-180 aa
PF15757Amelotin60-86 aa
PF15757Amelotin96-260 aa
PF30687Nuo9p5190-198 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G597940PF02535Zip223341.6e-70238.6
TkA01G597940PF06979TMEM7023370.01216.2
TkA01G597940PF02417Chromate_transp25859.26.9
TkA01G597940PF30687Nuo9p530460.4811.0
TkA01G597940PF06979TMEM70561800.01216.2
TkA01G597940PF15757Amelotin60860.211.9
TkA01G597940PF15757Amelotin962600.211.9
TkA01G597940PF30687Nuo9p51901980.4811.0
TkA01G597940PF02417Chromate_transp2153029.26.9
TkA01G597940PF02417Chromate_transp2252629.26.9
TkA01G597940PF06979TMEM702422570.01216.2
TkA01G597940PF06979TMEM703063350.01216.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64738Arabidopsis thalianasp|O64738|ZIP6_ARATH Zinc transporter 6, chloroplastic67.000%Swiss-ProtHigh
O81123Arabidopsis thalianasp|O81123|ZIP1_ARATH Zinc transporter 141.000%Swiss-ProtMedium
Q8S3W4Arabidopsis thalianasp|Q8S3W4|ZIP8_ARATH Probable zinc transporter 839.900%Swiss-ProtMedium
Q6L8F9Oryza sativa subsp. japonicasp|Q6L8F9|ZIP6_ORYSJ Zinc transporter 655.600%Swiss-ProtHigh
Q6L8G0Oryza sativa subsp. japonicasp|Q6L8G0|ZIP5_ORYSJ Zinc transporter 539.800%Swiss-ProtMedium

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