TkA01G596170 | RubberDandelionOmics

Gene overview

TkA01G596170

Reference: TK1151 Chr: Chr01 Coordinates: 150104198-150105360 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1094 bp · TkA01G596170|TK1151|cDNA

GGAATGAACCACACCATACAATAAAGATAAGACTAAGACATCTACATTACACTCAGCTTTCTATTTGTAGAAAGCATCAATACCTGTTAGAGACCGAATCAGCTGATCATGGCAAAATCTCATGTTGTTATCGTCTCTTATCCAATGCAAGGTCATGTGATTCCATTAATGGAGTTCGCTCGACGCTTAACAAACGAAGGTATCAAAGTCACATTCGTAAACACGGAAGCCATTCACAAGGTCGTGACAAGCAACTTGGA...

CDS

Download CDS FASTA

621 bp · TkA01G596170|TK1151|CDS

ATGGCAAAATCTCATGTTGTTATCGTCTCTTATCCAATGCAAGGTCATGTGATTCCATTAATGGAGTTCGCTCGACGCTTAACAAACGAAGGTATCAAAGTCACATTCGTAAACACGGAAGCCATTCACAAGGTCGTGACAAGCAACTTGGAAGAAAAAAGGGATCTATTGCATATGGCTTCGATCTCTGATGGGTTAGAGTCACCGGAGGATCGGAAAGACTTTAGAAAGACATTGAAAGCGATGGTGGAAATCATGCC...

Protein

Download Protein FASTA

206 aa · TkA01G596170|TK1151|PROTEIN

MAKSHVVIVSYPMQGHVIPLMEFARRLTNEGIKVTFVNTEAIHKVVTSNLEEKRDLLHMASISDGLESPEDRKDFRKTLKAMVEIMPGKLEELVEKISEEDRSKVTCIVADSFMGWFIGVAKKMGIGSAAYCPSSATTQAILMCAQKWIDDGLMNSDDVKLGNFQIFRSWVNWVCRLIDLKGKCLKIVEILGVWIFLETILLAQIQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G596170`
TK1151 ID	TkA01G596170
OH-1004 ID	LXL04_000650
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	96.300
Protein coverage (%)	TK1151 78.155 / OH-1004 35.294 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G596170

Location Chr01:150104198-150105360 (+)

Description Similar to UGT83A1: UDP-glycosyltransferase 83A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02100`	UDP-glycosyltransferase 83A1.	No verified direct reference in this release
`At2g36970`	UDP-glycosyltransferase 86A1.	No verified direct reference in this release
`At1g24100`	Involved in the biosynthesis of glucosinolate.	Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis.2004 · DOI: 10.1111/j.1365-313x.2004.02261.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000650 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009801 cinnamic acid ester metabolic process Biological Process

GO:0033494 ferulate metabolic process Biological Process

GO:0046278 3,4-dihydroxybenzoate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047250 4-hydroxybenzoate 4-O-beta-D-glucosyltransferase activity Molecular Function

GO:0047891 flavone 7-O-beta-glucosyltransferase activity Molecular Function

GO:0047913 gallate 1-beta-glucosyltransferase activity Molecular Function

GO:0050004 isoflavone 7-O-glucosyltransferase activity Molecular Function

GO:0050057 linamarin synthase activity Molecular Function

KEGG gene cross-reference

ag:AEO45781

ag:AEO45782

ag:AHA54051

ath:AT3G02100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.710

Rank 1 · TkA01G596170 · TK1151

Nucleus0.209

Rank 2 · TkA01G596170 · TK1151

Endoplasmic reticulum0.107

Rank 3 · TkA01G596170 · TK1151

Peroxisome0.063

Rank 4 · TkA01G596170 · TK1151

Mitochondrion0.060

Rank 5 · TkA01G596170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168Glyco_transf_N5-129 aa

PF03033Glyco_transf_2815-65 aa

PF15919HicB_lk_antitox39-97 aa

PF23083FF_RHG35_4th72-93 aa

PF15919HicB_lk_antitox137-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G596170	`PF26168`	Glyco_transf_N	5	129	8.3e-06	26.6
TkA01G596170	`PF03033`	Glyco_transf_28	15	65	0.025	15.4
TkA01G596170	`PF15919`	HicB_lk_antitox	39	97	0.2	12.4
TkA01G596170	`PF23083`	FF_RHG35_4th	72	93	0.2	12.7
TkA01G596170	`PF15919`	HicB_lk_antitox	137	183	0.2	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGA8`	Arabidopsis thaliana	sp\|Q9SGA8\|U83A1_ARATH UDP-glycosyltransferase 83A1	42.200%	Swiss-Prot	Medium
`Q9SJL0`	Arabidopsis thaliana	sp\|Q9SJL0\|U86A1_ARATH UDP-glycosyltransferase 86A1	26.600%	Swiss-Prot	Low
`O48676`	Arabidopsis thaliana	sp\|O48676\|U74B1_ARATH UDP-glycosyltransferase 74B1	31.500%	Swiss-Prot	Medium

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