TkA01G595480 | RubberDandelionOmics

Gene overview

TkA01G595480

Reference: TK1151 Chr: Chr01 Coordinates: 149949269-149949943 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

618 bp · TkA01G595480|TK1151|cDNA

ATGGATTTGCCATCAGGATCGGGTTCACACGACCCTGGAGAACCTCCAGGTCCGTCGCAGCCTGGTGGCACAGTTGAATCACCCACCGGAAGGTCAAGGTCACAGGCAGCCGCAACACCATCACTCAGCCGATACGAGTCGCAGAAACGCCGCGACTGGAACACGTTCTTGCAGTACTTAAAGAACCATAAACCGCCGTTGACGCTAGCGCGGTGCAGCGGGGCTCACGTGATCGAGTTCCTCAAGTACCTCGATCAGTT...

CDS

Download CDS FASTA

618 bp · TkA01G595480|TK1151|CDS

ATGGATTTGCCATCAGGATCGGGTTCACACGACCCTGGAGAACCTCCAGGTCCGTCGCAGCCTGGTGGCACAGTTGAATCACCCACCGGAAGGTCAAGGTCACAGGCAGCCGCAACACCATCACTCAGCCGATACGAGTCGCAGAAACGCCGCGACTGGAACACGTTCTTGCAGTACTTAAAGAACCATAAACCGCCGTTGACGCTAGCGCGGTGCAGCGGGGCTCACGTGATCGAGTTCCTCAAGTACCTCGATCAGTT...

Protein

Download Protein FASTA

205 aa · TkA01G595480|TK1151|PROTEIN

MDLPSGSGSHDPGEPPGPSQPGGTVESPTGRSRSQAAATPSLSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHVTGCPYFGYPNPPAPCACPLKQAWGSLDALIGRLRAAYEENGGQPESNPFGARAVRIYLREVKDCQAKARGIPYEKKKRKRADGGGGGGGGGGGGDAGIISSSDSAPVTSTL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G595480`
TK1151 ID	TkA01G595480
OH-1004 ID	LXL04_000659
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G595480

Location Chr01:149949269-149949943 (-)

Description Similar to LSH6: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07090`	Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Y3I2`	Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light.	No verified direct reference in this release
`Os05g0347400`	Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light.	No verified direct reference in this release
`UniProt: A2XED8`	Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light.	No verified direct reference in this release
`Os01g0828900`	Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000659 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009299 mRNA transcription Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0090698 post-embryonic plant morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G07090

ath:AT5G58500

dosa:Os05g0347400

osa:107278201

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.894

Rank 1 · TkA01G595480 · TK1151

Cytoplasm0.211

Rank 2 · TkA01G595480 · TK1151

Mitochondrion0.039

Rank 3 · TkA01G595480 · TK1151

Cell membrane0.022

Rank 4 · TkA01G595480 · TK1151

Extracellular0.017

Rank 5 · TkA01G595480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20471DUF671628-104 aa

PF04852ALOG_dom35-157 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G595480	`PF20471`	DUF6716	28	104	0.13	12.0
TkA01G595480	`PF04852`	ALOG_dom	35	157	2.7e-66	222.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LMK2`	Arabidopsis thaliana	sp\|Q9LMK2\|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	77.100%	Swiss-Prot	High
`A2Y3I2`	Oryza sativa subsp. indica	sp\|A2Y3I2\|G1L9_ORYSI Protein G1-like9	87.500%	Swiss-Prot	Medium
`Q5W659`	Oryza sativa subsp. japonica	sp\|Q5W659\|G1L9_ORYSJ Protein G1-like9	87.500%	Swiss-Prot	Medium
`A2XED8`	Oryza sativa subsp. indica	sp\|A2XED8\|G1L7_ORYSI Protein G1-like7	76.800%	Swiss-Prot	High
`Q941W1`	Oryza sativa subsp. japonica	sp\|Q941W1\|G1L7_ORYSJ Protein G1-like7	76.800%	Swiss-Prot	High

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