TkA01G590510 | RubberDandelionOmics

Gene overview

TkA01G590510

Reference: TK1151 Chr: Chr01 Coordinates: 148634696-148635107 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

309 bp · TkA01G590510|TK1151|cDNA

CTGGGCACAACGCCTGGAAATTTGCATAGGGGCAGCAAAAGGACTACATTACCTTCACTCGGGTTGGGTACCAAGAATCAACCAGATACCTTACTCTATACAAAGGTTGCGGGTACCCAATTTTACTTAGATCCCACTTACCATGAAAGTCGCATCCTACGAAAAGAATCAGACGTCTATTCGTTTGGTGTCGCACTTTTTGAAATTTTGAGTGGGATGCTTGTTTATCGAGAAGGAAATATTGGAGATGAGCGACAGTT...

CDS

Download CDS FASTA

309 bp · TkA01G590510|TK1151|CDS

CTGGGCACAACGCCTGGAAATTTGCATAGGGGCAGCAAAAGGACTACATTACCTTCACTCGGGTTGGGTACCAAGAATCAACCAGATACCTTACTCTATACAAAGGTTGCGGGTACCCAATTTTACTTAGATCCCACTTACCATGAAAGTCGCATCCTACGAAAAGAATCAGACGTCTATTCGTTTGGTGTCGCACTTTTTGAAATTTTGAGTGGGATGCTTGTTTATCGAGAAGGAAATATTGGAGATGAGCGACAGTT...

Protein

Download Protein FASTA

102 aa · TkA01G590510|TK1151|PROTEIN

LGTTPGNLHRGSKRTTLPSLGLGTKNQPDTLLYTKVAGTQFYLDPTYHESRILRKESDVYSFGVALFEILSGMLVYREGNIGDERQFLMNTVNICRAPRLSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G590510`
TK1151 ID	TkA01G590510
OH-1004 ID	LXL04_000739
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 79.412 / OH-1004 45.251 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G590510`
Location	Chr01:148634696-148635107 (-)
Description	Similar to HERK1: Receptor-like protein kinase HERK 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000739` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009741 response to brassinosteroid Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0010038 response to metal ion Biological Process GO:0010183 pollen tube guidance Biological Process GO:0010483 pollen tube reception Biological Process GO:0051924 regulation of calcium ion transport Biological Process GO:0080147 root hair cell development Biological Process GO:0097275 intracellular ammonium homeostasis Biological Process GO:0005576 extracellular region Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference	ath:AT2G39360 ath:AT3G46290 ath:AT5G38990 ath:AT5G59700 ath:AT5G61350 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511

Rank 1 · TkA01G590510 · TK1151

Nucleus0.334

Rank 2 · TkA01G590510 · TK1151

Mitochondrion0.107

Rank 3 · TkA01G590510 · TK1151

Cell membrane0.090

Rank 4 · TkA01G590510 · TK1151

Endoplasmic reticulum0.076

Rank 5 · TkA01G590510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase21-94 aa

PF07714PK_Tyr_Ser-Thr46-76 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G590510	`PF00069`	Pkinase	21	94	1.5e-05	25.3
TkA01G590510	`PF07714`	PK_Tyr_Ser-Thr	46	76	0.00045	20.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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