TkA01G589390 | RubberDandelionOmics

Gene overview

TkA01G589390

Reference: TK1151 Chr: Chr01 Coordinates: 148269046-148270513 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

949 bp · TkA01G589390|TK1151|cDNA

ATTTATCAAGAAAATAAAAGAAAGCGAAATCCTCTGTTGCCGTTCTTCTCTGCTTCCTCCGGGCAGTTATAGTTTGCCAGGACACCTGTGAATTTACCTTAACAAGGCGATGATCGGCGCTCGTATCGGAGTTTCATCACAATATACAGTTGAATTAGTAGATGTGAATATAGCAGCTGGGAATGTGACATCATCCATTGATGGTGGTAATGATGCTTCATATGAACAAAGGACTGTTGAAGAACCATGTGTAGGTATGG...

CDS

Download CDS FASTA

669 bp · TkA01G589390|TK1151|CDS

ATGATCGGCGCTCGTATCGGAGTTTCATCACAATATACAGTTGAATTAGTAGATGTGAATATAGCAGCTGGGAATGTGACATCATCCATTGATGGTGGTAATGATGCTTCATATGAACAAAGGACTGTTGAAGAACCATGTGTAGGTATGGAGTTTGACTCTGAGGATGCTGCTAAGAAGTTTTATGATGAATATGCAAGACATACAGGATTCAAAATGCGGATTGATCAATGTCGTCGATCAGAGATCGATAAAAAAGT...

Protein

Download Protein FASTA

222 aa · TkA01G589390|TK1151|PROTEIN

MIGARIGVSSQYTVELVDVNIAAGNVTSSIDGGNDASYEQRTVEEPCVGMEFDSEDAAKKFYDEYARHTGFKMRIDQCRRSEIDKKVISRRLSCNKEGYYTKSKNQFGQIRKQHTSSRQGCNAMMLVRVNKFGKWIVTKFEKDHTHPLVLSACLSTNEGDCKERRIEALSAELKHQDRLIKFYRENLSTFLRDIEQQTEVLSTKIQVAVNNVREIETKDKKW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G589390`
TK1151 ID	TkA01G589390
OH-1004 ID	LXL04_000771
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G589390

Location Chr01:148269046-148270513 (-)

Description Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38180`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At5g18960`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At3g06250`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000771 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G06250

ath:AT4G38180

ath:AT5G18960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA01G589390 · TK1151

Cytoplasm0.087

Rank 2 · TkA01G589390 · TK1151

Cell membrane0.020

Rank 3 · TkA01G589390 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA01G589390 · TK1151

Plastid0.010

Rank 5 · TkA01G589390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21599ZSWIM3_N48-146 aa

PF03101FAR160-149 aa

PF27241CLIP1162-214 aa

PF21928XLF_CC162-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G589390	`PF21599`	ZSWIM3_N	48	146	0.0063	17.8
TkA01G589390	`PF03101`	FAR1	60	149	5.6e-26	91.8
TkA01G589390	`PF27241`	CLIP1	162	214	0.049	14.4
TkA01G589390	`PF21928`	XLF_CC	162	180	0.29	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZL8`	Arabidopsis thaliana	sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5	39.400%	Swiss-Prot	Medium
`Q3E7I5`	Arabidopsis thaliana	sp\|Q3E7I5\|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12	40.400%	Swiss-Prot	Low
`Q9M8J3`	Arabidopsis thaliana	sp\|Q9M8J3\|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7	39.400%	Swiss-Prot	Low

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