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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G588520
Reference: TK1151 Chr: Chr01 Coordinates: 148052966-148057199 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2218 bp · TkA01G588520|TK1151|cDNA

TTTTAAAGTGCGTATCATCTATCAATTTCACGATTTAGAAACTCCGGCCGGCGCCAAACCCTCTCTCCCTCGTTCAAAGTTTCTCATCCGAACTACATTTTAAACGTTGAACGCTACGACGGCAGCTATGATCTGATCTGCAGCCTTGATCCATTTCGGGACTCCGTTTTTGGATAATTGGTCATTTTACCCACTGAAATCAGGAAGCAGCAGATGAGTGGGGCGAGACTGTGTTCATTATTGGGTGAATTGGGGTACGA...

CDS

Download CDS FASTA

1851 bp · TkA01G588520|TK1151|CDS

ATGAGTGGGGCGAGACTGTGTTCATTATTGGGTGAATTGGGGTACGAAGGTCATGGGGCACTTGATCCAGACAGCTTTGAATGGCCATTTCAGTACGAAGATGCTCGTCCTATACTCGATTGGCTATGCTCCAGCCTTCGTCCCTCCAATGTCCTCTCCGCCTCTGAACTTTCCCAGTATGAACAGTTTATACAAGATGGAAAGCTTTTGGAGGGGGAAGACCTAGATTTTGCTTATGAAAGCATATCAGCCTTTTCAAC...

Protein

Download Protein FASTA

616 aa · TkA01G588520|TK1151|PROTEIN

MSGARLCSLLGELGYEGHGALDPDSFEWPFQYEDARPILDWLCSSLRPSNVLSASELSQYEQFIQDGKLLEGEDLDFAYESISAFSTRRDNQEAVFGAEEGLKEIRDATLAYKTEAMELQRQLGHLQSQYDMLSTQASALIQGKRARVASTSTVNGQLTTIDDSLSARNLEMNAVLGRIASTAQELAHFHSGDEDGIYLAYSDFHPYLLVDSLCMKELNQWFVKQLDTGPYRLVAEEGKSKCSWVNLDDISNTLVRDSQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G588520
TK1151 IDTkA01G588520
OH-1004 IDLXL04_000781
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G588520
LocationChr01:148052966-148057199 (+)
DescriptionSimilar to AUG3: AUGMIN subunit 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g48520 Involved in microtubules reorganization during spindle and phragmoplast development.
Augmin plays a critical role in organizing the spindle and phragmoplast microtubule arrays in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086892

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000781 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007098 centrosome cycle Biological Process
GO:0010968 regulation of microtubule nucleation Biological Process
GO:0031023 microtubule organizing center organization Biological Process
GO:0051225 spindle assembly Biological Process
GO:0051301 cell division Biological Process
GO:0080175 phragmoplast microtubule organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005813 centrosome Cellular Component
GO:0005815 microtubule organizing center Cellular Component
GO:0005819 spindle Cellular Component
KEGG gene cross-reference
ath:AT5G48520
dre:566923
hsa:79441
mmu:231123
xla:446808
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.611
Rank 1 · TkA01G588520 · TK1151
Nucleus0.312
Rank 2 · TkA01G588520 · TK1151
Golgi apparatus0.102
Rank 3 · TkA01G588520 · TK1151
Lysosome / Vacuole0.059
Rank 4 · TkA01G588520 · TK1151
Cell membrane0.059
Rank 5 · TkA01G588520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14932HAUS-augmin328-289 aa
PF28231STB2_C78-150 aa
PF27045HAUS3_C118-134 aa
PF04513Baculo_PEP_C118-178 aa
PF01873eIF-5_eIF-2B234-296 aa
PF28231STB2_C244-354 aa
PF04513Baculo_PEP_C296-357 aa
PF14932HAUS-augmin3342-360 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G588520PF14932HAUS-augmin3282891.6e-84284.2
TkA01G588520PF28231STB2_C781500.05414.7
TkA01G588520PF27045HAUS3_C1181349e-0729.4
TkA01G588520PF04513Baculo_PEP_C1181789.67.0
TkA01G588520PF01873eIF-5_eIF-2B2342960.1312.8
TkA01G588520PF28231STB2_C2443540.05414.7
TkA01G588520PF04513Baculo_PEP_C2963579.67.0
TkA01G588520PF14932HAUS-augmin33423601.6e-84284.2
TkA01G588520PF27045HAUS3_C4835029e-0729.4
TkA01G588520PF04513Baculo_PEP_C4835399.67.0
TkA01G588520PF27045HAUS3_C5145279e-0729.4
TkA01G588520PF28231STB2_C5175840.05414.7
TkA01G588520PF14932HAUS-augmin35385831.6e-84284.2
TkA01G588520PF27045HAUS3_C5436129e-0729.4
TkA01G588520PF04513Baculo_PEP_C5996139.67.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WQE7Arabidopsis thalianasp|Q0WQE7|AUG3_ARATH AUGMIN subunit 380.500%Swiss-ProtHigh

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