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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G585740
Reference: TK1151 Chr: Chr01 Coordinates: 147316129-147316449 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

321 bp · TkA01G585740|TK1151|cDNA

ATTTCAGTTTATTTCAGCAGTCTGCAGACGTTAAAAAACAAACAGTCTTCTTCTTGCAGACTGCAGACGTTTGGTCCACCTCTTCTGCTGCAGAGGCTTGCAGATGTGGTCCGCACACTGCAGATGTTTTGGCTTCGAAAAAACAAACAGCACCTAAATGACGTTGTTAATAATTTAATAAAAAAATATATGTATATTTCTAATTCCTACCAAGAAGAGAAATCATTGCAATATTATACTTATGTTTTTCACAATACAGT...

CDS

Download CDS FASTA

321 bp · TkA01G585740|TK1151|CDS

ATTTCAGTTTATTTCAGCAGTCTGCAGACGTTAAAAAACAAACAGTCTTCTTCTTGCAGACTGCAGACGTTTGGTCCACCTCTTCTGCTGCAGAGGCTTGCAGATGTGGTCCGCACACTGCAGATGTTTTGGCTTCGAAAAAACAAACAGCACCTAAATGACGTTGTTAATAATTTAATAAAAAAATATATGTATATTTCTAATTCCTACCAAGAAGAGAAATCATTGCAATATTATACTTATGTTTTTCACAATACAGT...

Protein

Download Protein FASTA

106 aa · TkA01G585740|TK1151|PROTEIN

ISVYFSSLQTLKNKQSSSCRLQTFGPPLLLQRLADVVRTLQMFWLRKNKQHLNDVVNNLIKKYMYISNSYQEEKSLQYYTYVFHNTVLNVKGFFKCCFVKDKETKN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G585740
TK1151 IDTkA01G585740
OH-1004 IDLXL04_011522
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)93.800
Protein coverage (%)TK1151 45.283 / OH-1004 8.177
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G585740
LocationChr01:147316129-147316449 (-)
DescriptionSimilar to snrpe: Small nuclear ribonucleoprotein E
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011522 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0036261 7-methylguanosine cap hypermethylation Biological Process
GO:0048025 negative regulation of mRNA splicing, via spliceosome Biological Process
GO:0071045 nuclear histone mRNA catabolic process Biological Process
GO:1903241 U2-type prespliceosome assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
KEGG gene cross-reference
dme:Dmel_CG18591
dre:393979
gga:396180
hsa:6635
mmu:20643
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.412
Rank 1 · TkA01G585740 · TK1151
Nucleus0.340
Rank 2 · TkA01G585740 · TK1151
Mitochondrion0.207
Rank 3 · TkA01G585740 · TK1151
Cell membrane0.079
Rank 4 · TkA01G585740 · TK1151
Endoplasmic reticulum0.079
Rank 5 · TkA01G585740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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