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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G580990
Reference: TK1151 Chr: Chr01 Coordinates: 146193393-146198889 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3240 bp · TkA01G580990|TK1151|cDNA

CAACTTCGTCATCCCCACCTCATCAGATTCCACCTCCTCCGTCTTTCCTCCGGTACCCTGGCCCACTCTTTTTACCCCAACCTATTCAACCTTTATTCAAGGCACATATGCTATCACGGAGCCTCGTGCCATACCTGCCTCCCCTCTCTACCGAACCTAACTCGGAACCTATTTTATACTTTTACATTCACACCTGAGCCTGGTTTTCGCTTTCCGAACCTCGCCCTCAAGGTTTCGTCGTTCTTGGGATTTTAATGTTC...

CDS

Download CDS FASTA

2325 bp · TkA01G580990|TK1151|CDS

ATGGCGCAGAGTAGTTGGGAAGCTGATAAAATGTTGGATGTTTACATCCATGACTATTTGTTGAAACGGAAGTTGCATGCATCTGCAAAAGCATTCATGACAGAAGGGAAGGTTGCTACAGACCCTGTAGCCATTGATGCTCCTGGTGGATTTCTCTTTGAGTGGTGGTCTGTCTTTTGGGACATTTTTATAGCACGGACTAACGAAAAACATTCTGAAGCAGCTGTAGCTTACATTGAGACACAGCAAATGAAAGCAAA...

Protein

Download Protein FASTA

774 aa · TkA01G580990|TK1151|PROTEIN

MAQSSWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAVAYIETQQMKAKEHQQQLQMQQMHFIQQRNAQMQRRDPNHPPIGGHVNPMNNDAINMMGKPSPSTLGGMKIYEESMKPSHSMDSETSPALLDASRMALLKSATNHQGQLMQGNSANMSASLQQIQGRPQLNTEIKQEVNMGSTQKTLPTDPSSIYGQAILQSKSGMGNTGFNQGVTGLPLKGWPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G580990
TK1151 IDTkA01G580990
OH-1004 IDLXL04_000847
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G580990
LocationChr01:146193393-146198889 (+)
DescriptionSimilar to LUH: Transcriptional corepressor LEUNIG_HOMOLOG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g32700 May act as a transcriptional corepressor-complex subunit that represses abiotic stress-related genes.
The Arabidopsis transcription factor LUH/MUM1 is required for extrusion of seed coat mucilage.2011 · DOI: 10.1104/pp.111.172023
At4g32551 Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development.
The rotunda2 mutants identify a role for the LEUNIG gene in vegetative leaf morphogenesis.2004 · DOI: 10.1093/jxb/erh165
At5g56130 Acts as a component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export.
Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis.2010 · DOI: 10.1073/pnas.0911341107
The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis.2010 · DOI: 10.1105/tpc.110.076638

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000847 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006974 DNA damage response Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009620 response to fungus Biological Process
GO:0009624 response to nematode Biological Process
GO:0009733 response to auxin Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
KEGG gene cross-reference
ana:alr3466
ath:AT2G32700
ath:AT4G32551
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.921
Rank 1 · TkA01G580990 · TK1151
Cytoplasm0.190
Rank 2 · TkA01G580990 · TK1151
Cell membrane0.021
Rank 3 · TkA01G580990 · TK1151
Mitochondrion0.018
Rank 4 · TkA01G580990 · TK1151
Lysosome / Vacuole0.009
Rank 5 · TkA01G580990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08513LisH10-36 aa
PF30097LisH_SSDP12-66 aa
PF25174Beta-prop_THOC373-102 aa
PF23775Beta-prop_RIG_2nd73-97 aa
PF23769Beta-prop_WDR75_2nd73-103 aa
PF25460Beta-prop_Aladin88-126 aa
PF23419WD40_RFWD3305-322 aa
PF25172Beta-prop_WDR3_2nd477-616 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G580990PF08513LisH10361.3e-0628.9
TkA01G580990PF30097LisH_SSDP12669e-2587.6
TkA01G580990PF25174Beta-prop_THOC3731025.5e-43147.6
TkA01G580990PF23775Beta-prop_RIG_2nd73974.7e-0626.9
TkA01G580990PF23769Beta-prop_WDR75_2nd731030.529.8
TkA01G580990PF25460Beta-prop_Aladin881264.4e-0936.7
TkA01G580990PF23419WD40_RFWD33053220.00218.2
TkA01G580990PF25172Beta-prop_WDR3_2nd4776161.9e-2590.5
TkA01G580990PF23769Beta-prop_WDR75_2nd4835600.529.8
TkA01G580990PF23414Beta-prop_EML_24926135.2e-2589.0
TkA01G580990PF25168Beta-prop_WDR36-Utp21_2nd4925941.1e-1868.3
TkA01G580990PF24817WD40_WDHD1_1st4935701e-38133.9
TkA01G580990PF24782WD40_MABP1-WDR62_2nd4937336e-1452.5
TkA01G580990PF16529Ge1_WD404935397.4e-0625.9
TkA01G580990PF23393Beta-prop_WDR90_POC16_2nd4955263.1e-1247.0
TkA01G580990PF24780WD40_MABP1-WDR62_1st4956158.2e-0935.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48847Arabidopsis thalianasp|O48847|LUH_ARATH Transcriptional corepressor LEUNIG_HOMOLOG60.700%Swiss-ProtHigh
Q9FUY2Arabidopsis thalianasp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG40.000%Swiss-ProtMedium
Q9FKT5Arabidopsis thalianasp|Q9FKT5|THOC3_ARATH THO complex subunit 320.500%Swiss-ProtLow

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