TkA01G579780 | RubberDandelionOmics

Gene overview

TkA01G579780

Reference: TK1151 Chr: Chr01 Coordinates: 145884453-145889256 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1790 bp · TkA01G579780|TK1151|cDNA

TCTCATTTCAGTCTTCCCTCCACCGAAACTGCAATGAACATTCCAACTTCCAAGTTGATTTCACACCCAACCTGCCCCACGCACAGCCCCACAACCACCCGTAACAGGCCTTAAACCCAAATTCCCCCATTAATTTCATTATATATACATACATCGCCGCGTGTGCGATCTGTTACAACGCAGTGCAGAAATCGATTTAAAAAAAATTAGCATCAGCGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGATAA...

CDS

Download CDS FASTA

1308 bp · TkA01G579780|TK1151|CDS

ATGGATAAAGCCATTAACAGACAGAGGATTTTGCTTCAGCACCTTCAACCTACTTCTTCTTCTAATCATTGCCATGAATCTACCATCTCTGCTTCAACTTGTTTAGCTGGCAATACCACAACTGCCTCTAGAGATGATGTTGTTATTGTTGCTGCATACCGTACAGCTCAATGCAAATCCAAACGTGGCGGTTTTAAAGACACTCTTCCTGATGATTTACTCGCAACTGTTCTAAAGGCAGTAATAGAGAAGACAAATGT...

Protein

Download Protein FASTA

435 aa · TkA01G579780|TK1151|PROTEIN

MDKAINRQRILLQHLQPTSSSNHCHESTISASTCLAGNTTTASRDDVVIVAAYRTAQCKSKRGGFKDTLPDDLLATVLKAVIEKTNVSPSEIGDIIVGTVLAPGSQRAIECRMAALYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGVESMSTDQIGPLSTVNPKADEFAQARDCLLPMGITSENVAQRFGVTRQEQDQAAVESHRRAAIATSSGKFKDEIVPVHTKIVDPKSGEVKAVTITVDDGIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G579780`
TK1151 ID	TkA01G579780
OH-1004 ID	LXL04_000865
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G579780

Location Chr01:145884453-145889256 (+)

Description Similar to PED1: 3-ketoacyl-CoA thiolase 2, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33150`	Involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth.	Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence.2002 · DOI: 10.1104/pp.010843 Gene-specific involvement of beta-oxidation in wound-activated responses in Arabidopsis.2004 · DOI: 10.1104/pp.104.039925 Arabidopsis 3-ketoacyl-CoA thiolase-2 (KAT2), an enzyme of fatty acid β-oxidation, is involved in ABA signal transduction.2011 · DOI: 10.1093/pcp/pcr008 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation.1998 · DOI: 10.1105/tpc.10.2.183
`At1g04710`	Involved in fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth.	No verified direct reference in this release
`At5g48880`	Probably involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth.	Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings.2001 · DOI: 10.1046/j.1365-313x.2001.01095.x Gene-specific involvement of beta-oxidation in wound-activated responses in Arabidopsis.2004 · DOI: 10.1104/pp.104.039925

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000865 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006635 fatty acid beta-oxidation Biological Process

GO:0008206 bile acid metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010111 glyoxysome organization Biological Process

GO:0010124 phenylacetate catabolic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase Biological Process

KEGG gene cross-reference

ath:AT1G04710

ath:AT2G33150

ath:AT5G48880

hsa:30

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.575

Rank 1 · TkA01G579780 · TK1151

Mitochondrion0.283

Rank 2 · TkA01G579780 · TK1151

Cytoplasm0.132

Rank 3 · TkA01G579780 · TK1151

Nucleus0.050

Rank 4 · TkA01G579780 · TK1151

Plastid0.039

Rank 5 · TkA01G579780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00108Thiolase_N47-302 aa

PF08545ACP_syn_III129-164 aa

PF08545ACP_syn_III284-301 aa

PF02803Thiolase_C310-433 aa

PF22691Thiolase_C_1335-366 aa

PF08541ACP_syn_III_C342-427 aa

PF22691Thiolase_C_1377-427 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G579780	`PF00108`	Thiolase_N	47	302	3.7e-76	256.7
TkA01G579780	`PF08545`	ACP_syn_III	129	164	0.11	13.1
TkA01G579780	`PF08545`	ACP_syn_III	284	301	0.11	13.1
TkA01G579780	`PF02803`	Thiolase_C	310	433	6.5e-49	165.4
TkA01G579780	`PF22691`	Thiolase_C_1	335	366	0.0082	16.6
TkA01G579780	`PF08541`	ACP_syn_III_C	342	427	0.052	14.4
TkA01G579780	`PF22691`	Thiolase_C_1	377	427	0.0082	16.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q56WD9`	Arabidopsis thaliana	sp\|Q56WD9\|THIK2_ARATH 3-ketoacyl-CoA thiolase 2, peroxisomal	77.500%	Swiss-Prot	High
`Q8LF48`	Arabidopsis thaliana	sp\|Q8LF48\|THIK1_ARATH 3-ketoacyl-CoA thiolase 1, peroxisomal	76.100%	Swiss-Prot	High
`Q570C8`	Arabidopsis thaliana	sp\|Q570C8\|THIK5_ARATH 3-ketoacyl-CoA thiolase 5, peroxisomal	73.900%	Swiss-Prot	High

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