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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G572400
Reference: TK1151 Chr: Chr01 Coordinates: 143978454-143980280 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1263 bp · TkA01G572400|TK1151|cDNA

ATGATTGCTGATCAACTAATGGAACATGAAAAGCAGATTAAGGATGGAACTGTACTCCTTGAACCTGGTACTGATGCCATGACCATGGTTTTTGGCAAGGATAAGGGTGGCTATTTAAAGGGTGTGGGAACGGGAGTGACTGCAACCACATACTTTCACATCCCTCGCAACAAAGGATCTGCTAAGGAGGAAATTAAGGAGCTAAAATGTGCAGTCCAGAATGGGAAGGTTGAACTTGAGAAGAAAGATGCTCAAGTGAA...

CDS

Download CDS FASTA

1263 bp · TkA01G572400|TK1151|CDS

ATGATTGCTGATCAACTAATGGAACATGAAAAGCAGATTAAGGATGGAACTGTACTCCTTGAACCTGGTACTGATGCCATGACCATGGTTTTTGGCAAGGATAAGGGTGGCTATTTAAAGGGTGTGGGAACGGGAGTGACTGCAACCACATACTTTCACATCCCTCGCAACAAAGGATCTGCTAAGGAGGAAATTAAGGAGCTAAAATGTGCAGTCCAGAATGGGAAGGTTGAACTTGAGAAGAAAGATGCTCAAGTGAA...

Protein

Download Protein FASTA

420 aa · TkA01G572400|TK1151|PROTEIN

MIADQLMEHEKQIKDGTVLLEPGTDAMTMVFGKDKGGYLKGVGTGVTATTYFHIPRNKGSAKEEIKELKCAVQNGKVELEKKDAQVKALTTKFDEQQETLNWVLAHLAATGTKIPNLPNTSGVSLDNVVESPATADLNVSTESTEEAFTQAIKRTNKKGVQIKSVAAIADKPSPTLTPTTFKNTKKVLAPKTSTITPELAAATSPPNQVHQSTIKTNKKAVSTKNVSEVPATSPSNPVPQTIKCYLCYPDKRNIVARGEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G572400
TK1151 IDTkA01G572400
OH-1004 IDLXL04_007887
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)72.100
Protein coverage (%)TK1151 94.762 / OH-1004 47.634
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G572400
LocationChr01:143978454-143980280 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.931
Rank 1 · TkA01G572400 · TK1151
Cytoplasm0.142
Rank 2 · TkA01G572400 · TK1151
Mitochondrion0.022
Rank 3 · TkA01G572400 · TK1151
Cell membrane0.019
Rank 4 · TkA01G572400 · TK1151
Extracellular0.009
Rank 5 · TkA01G572400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06103DUF94850-117 aa
PF00038Filament59-106 aa
PF01519DUF1660-112 aa
PF30842LEKR161-111 aa
PF05310Tenui_NS362-90 aa
PF02403Seryl_tRNA_N66-118 aa
PF07245Phlebovirus_G269-89 aa
PF26133DUF8039118-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G572400PF06103DUF948501170.3911.7
TkA01G572400PF00038Filament591060.02714.8
TkA01G572400PF01519DUF16601120.01116.9
TkA01G572400PF30842LEKR1611110.1613.0
TkA01G572400PF05310Tenui_NS362900.4511.4
TkA01G572400PF02403Seryl_tRNA_N661180.113.6
TkA01G572400PF07245Phlebovirus_G269890.09512.4
TkA01G572400PF26133DUF80391181521.3e-1558.3
TkA01G572400PF06103DUF9481411570.3911.7
TkA01G572400PF01519DUF161421670.01116.9
TkA01G572400PF07245Phlebovirus_G21853020.09512.4
TkA01G572400PF06103DUF9481882080.3911.7
TkA01G572400PF26133DUF80392002261.3e-1558.3
TkA01G572400PF05310Tenui_NS32292900.4511.4
TkA01G572400PF26133DUF80392383201.3e-1558.3
TkA01G572400PF03017Transposase_232543060.0215.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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