TkA01G565570 | RubberDandelionOmics

Gene overview

TkA01G565570

Reference: TK1151 Chr: Chr01 Coordinates: 142307458-142309244 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

853 bp · TkA01G565570|TK1151|cDNA

ATAAATCCCATCTTAATCCTTGTCCTTGTCAATTGTCATGGACACTTGTACAACTTTGCTCATTACATTACAACCCATTCAGTTATTACAGTTAAATGTCAAATCACTACACCTTGCACTTTGTCCATGATCACGGGCTTTACTCCGTGTGTAAATTATTTAACTGGAAGCACTGCAAATGGGAAATCACCAAGCGTGAGTTGTTGTGATGCAATGGAGTCACTAATGACAACAAGTATGGATTGTACCTGTCTTTTAGT...

CDS

Download CDS FASTA

684 bp · TkA01G565570|TK1151|CDS

ATAAATCCCATCTTAATCCTTGTCCTTGTCAATTGTCATGGACACTTGTACAACTTTGCTCATTACATTACAACCCATTCAGTTATTACAGTTAAATGTCAAATCACTACACCTTGCACTTTGTCCATGATCACGGGCTTTACTCCGTGTGTAAATTATTTAACTGGAAGCACTGCAAATGGGAAATCACCAAGCGTGAGTTGTTGTGATGCAATGGAGTCACTAATGACAACAAGTATGGATTGTACCTGTCTTTTAGT...

Protein

Download Protein FASTA

227 aa · TkA01G565570|TK1151|PROTEIN

INPILILVLVNCHGHLYNFAHYITTHSVITVKCQITTPCTLSMITGFTPCVNYLTGSTANGKSPSVSCCDAMESLMTTSMDCTCLLVTGNVPFSLPNPINQALAISLPQACNSESMAFTCKASGVSLPPPGPMLFAPPPPKAFPPIADSPEFSPSPSVLEMIAITPTHSETTTMVSFNTQEASAPLTRSTPRATSEILPLVNEALALNRLSISSTFIVLWILANYCF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G565570`
TK1151 ID	TkA01G565570
OH-1004 ID	LXL04_001033
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.500
Protein coverage (%)	TK1151 89.427 / OH-1004 91.855 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G565570

Location Chr01:142307458-142309244 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g48140`	Essential protein involved in female gametophyte development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001033 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002240 response to molecule of oomycetes origin Biological Process

GO:0006869 lipid transport Biological Process

GO:0009561 megagametogenesis Biological Process

GO:0009624 response to nematode Biological Process

GO:0009845 seed germination Biological Process

GO:0010214 seed coat development Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G05450

ath:AT2G48130

ath:AT2G48140

ath:AT3G22600

ath:AT3G22620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.631

Rank 1 · TkA01G565570 · TK1151

Endoplasmic reticulum0.150

Rank 2 · TkA01G565570 · TK1151

Extracellular0.109

Rank 3 · TkA01G565570 · TK1151

Cytoplasm0.095

Rank 4 · TkA01G565570 · TK1151

Nucleus0.071

Rank 5 · TkA01G565570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368LTP_229-120 aa

PF00234Tryp_alpha_amyl46-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G565570	`PF14368`	LTP_2	29	120	5.9e-15	55.9
TkA01G565570	`PF00234`	Tryp_alpha_amyl	46	120	4.4e-06	27.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AX3`	Arabidopsis thaliana	sp\|Q94AX3\|LTG16_ARATH Non-specific lipid transfer protein GPI-anchored 16	49.500%	Swiss-Prot	Low

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