TkA01G564740 | RubberDandelionOmics

Gene overview

TkA01G564740

Reference: TK1151 Chr: Chr01 Coordinates: 142088887-142090649 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1263 bp · TkA01G564740|TK1151|cDNA

GGCATCTTCAGAAGTTTCTCTCTAGAGGAAAACATTGTATACATAATTTGTATGTCTAACTATAATGAAAGAATGTTTAGTTTAAATTTATAGAACTTGTACAGTAAATTCGAATATTATACTTGGAAGTTGGAACGGTACATTTCAAATATCATTATTTCTTAAGCTGAAATTTATATTTACGAAAAAGAATCAGACCAAGGTCGGAATGGTTGACAAAAATAAAATCTTGAAACCAAGCATTATTATTAATTACTGCA...

CDS

Download CDS FASTA

813 bp · TkA01G564740|TK1151|CDS

ATGAAGACGACGGTGGTGGTGGTTATGGCGTTGATCATGGCGGCATTTACGACGGCAATGGGTGGAGAAGTTTATAGAGTTGGCGGTTCTGCTGGCTGGACTAACATCGGACATGTGGATTACAAGACTTGGGCTTCTACCAAACTATTTCGAGTTGGCGACACCATTGTTTTTGACTACAACAAAGATTTCCAAAACGTGGCAAGAGTTACATACTCCGCTTTTCTAACATGCAACGGCGGCGCTACTTACTCCACCTT...

Protein

Download Protein FASTA

271 aa · TkA01G564740|TK1151|PROTEIN

MKTTVVVVMALIMAAFTTAMGGEVYRVGGSAGWTNIGHVDYKTWASTKLFRVGDTIVFDYNKDFQNVARVTYSAFLTCNGGATYSTFNSGNDSFPIIFPGHYYFICTLPGHCEAGQKVDIRVPVAARQPTHPSTPAPIQPLPFPYPPPAVPSLSPVKTPPSHSPPPATTPSSSPAASQSPPPVATPSPSPVSSQSLPPPPSQSPSAASSQSPSPASSDSSPLAPTESPLLAQSSPKKSPPSTPAIPSAAKAPASPKNTSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G564740`
TK1151 ID	TkA01G564740
OH-1004 ID	LXL04_001234
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.400
Protein coverage (%)	TK1151 37.269 / OH-1004 56.111 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G564740`
Location	Chr01:142088887-142090649 (-)
Description	Similar to Stellacyanin
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_001234` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0098552 side of membrane Cellular Component GO:0009055 electron transfer activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT2G32300 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.404

Rank 1 · TkA01G564740 · TK1151

Extracellular0.338

Rank 2 · TkA01G564740 · TK1151

Endoplasmic reticulum0.148

Rank 3 · TkA01G564740 · TK1151

Cytoplasm0.081

Rank 4 · TkA01G564740 · TK1151

Nucleus0.042

Rank 5 · TkA01G564740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02298Cu_bind_like33-116 aa

PF26847Phage_T5_AP_Endonuclease40-94 aa

PF06525SoxE97-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G564740	`PF02298`	Cu_bind_like	33	116	4.2e-23	81.9
TkA01G564740	`PF26847`	Phage_T5_AP_Endonuclease	40	94	0.38	11.8
TkA01G564740	`PF06525`	SoxE	97	122	0.11	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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