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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G557160
Reference: TK1151 Chr: Chr01 Coordinates: 140092263-140092769 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

507 bp · TkA01G557160|TK1151|cDNA

AACAACCACAATAGTCACCCTCGATTCACGCGCGGGCAGAACTCCCCCGGCAGAGGGAGAAGAAAGCACCTTGATAGATATACGCCTTACAAACCTGAAAACTTTGAAAAAAATTATTACAAGAACAATCCCAAAGTTAACAATCGTGACACCCGGCAGTTTACAAGAAACCCAAGTCAATACTGCGACTTCCACAAGAGGACAGGTCATTCCACCAACGATTGCGAAGGTTTAAAGAAAGAGCGGGAGAGAAACAAAGT...

CDS

Download CDS FASTA

507 bp · TkA01G557160|TK1151|CDS

AACAACCACAATAGTCACCCTCGATTCACGCGCGGGCAGAACTCCCCCGGCAGAGGGAGAAGAAAGCACCTTGATAGATATACGCCTTACAAACCTGAAAACTTTGAAAAAAATTATTACAAGAACAATCCCAAAGTTAACAATCGTGACACCCGGCAGTTTACAAGAAACCCAAGTCAATACTGCGACTTCCACAAGAGGACAGGTCATTCCACCAACGATTGCGAAGGTTTAAAGAAAGAGCGGGAGAGAAACAAAGT...

Protein

Download Protein FASTA

168 aa · TkA01G557160|TK1151|PROTEIN

NNHNSHPRFTRGQNSPGRGRRKHLDRYTPYKPENFEKNYYKNNPKVNNRDTRQFTRNPSQYCDFHKRTGHSTNDCEGLKKERERNKVVTQPNVAPKKEENVYDTEIMMVHTNTHSEQRRKRRWESLDFSMDGPIPPNHQGTEPLIIQGIVGWVMVHRVMLNRVLGNRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G557160
TK1151 IDTkA01G557160
OH-1004 IDLXL04_012097
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)73.500
Protein coverage (%)TK1151 95.238 / OH-1004 21.012
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G557160
LocationChr01:140092263-140092769 (+)
DescriptionSimilar to AGO4A: Protein argonaute 4A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012097 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009554 megasporogenesis Biological Process
GO:0010526 transposable element silencing Biological Process
GO:0030422 siRNA processing Biological Process
GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process
GO:0031048 regulatory ncRNA-mediated heterochromatin formation Biological Process
GO:0031507 heterochromatin formation Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048481 plant ovule development Biological Process
GO:0051607 defense response to virus Biological Process
GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process
KEGG gene cross-reference
ath:AT2G27040
ath:AT5G21150
dosa:Os01g0275200
dosa:Os01g0275600
dosa:Os04g0151800
osa:4324438
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573
Rank 1 · TkA01G557160 · TK1151
Nucleus0.470
Rank 2 · TkA01G557160 · TK1151
Mitochondrion0.049
Rank 3 · TkA01G557160 · TK1151
Cell membrane0.042
Rank 4 · TkA01G557160 · TK1151
Endoplasmic reticulum0.031
Rank 5 · TkA01G557160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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