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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G556900
Reference: TK1151 Chr: Chr01 Coordinates: 140012109-140014561 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1811 bp · TkA01G556900|TK1151|cDNA

ATGATTACATTACTTGTTGTTGTTGTTGTTTCGGCAGATAGTAGTTATGGAAAAACACAGGTCGAAGGATTGTTGCCACCAAAAGATGAACATGGCGCTTACAAAAAGAGCGAGCCTAAGATACCAACAACAACAACAAAGCCCGTGATACCAACAAAAGAGGAACATGGAGGCTACAAAAAGAGCAATCCTAAGATACCAACAAAGCCAATGATACCAAAAGAGGAGTATGGAAAGAGCAAGAAGCCTAAGATTCCTGC...

CDS

Download CDS FASTA

705 bp · TkA01G556900|TK1151|CDS

ATGATTACATTACTTGTTGTTGTTGTTGTTTCGGCAGATAGTAGTTATGGAAAAACACAGGTCGAAGGATTGTTGCCACCAAAAGATGAACATGGCGCTTACAAAAAGAGCGAGCCTAAGATACCAACAACAACAACAAAGCCCGTGATACCAACAAAAGAGGAACATGGAGGCTACAAAAAGAGCAATCCTAAGATACCAACAAAGCCAATGATACCAAAAGAGGAGTATGGAAAGAGCAAGAAGCCTAAGATTCCTGC...

Protein

Download Protein FASTA

234 aa · TkA01G556900|TK1151|PROTEIN

MITLLVVVVVSADSSYGKTQVEGLLPPKDEHGAYKKSEPKIPTTTTKPVIPTKEEHGGYKKSNPKIPTKPMIPKEEYGKSKKPKIPAAKPPVVPKVAEHPNNIAVQGLIYCKYGSKLIPLKGATVRVTCLGVHKNGHESAPFSFSSCPADVKGYFLAKIASSELLKQDLWEVKECKSFLENSPWTGCKVPEDTNGGITGAHLTFTRMLNGYSLSSVGPFIYNPGPQPSLPKEGY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G556900
TK1151 IDTkA01G556900
OH-1004 IDLXL04_001167
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)78.300
Protein coverage (%)TK1151 100.000 / OH-1004 95.833
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G556900
LocationChr01:140012109-140014561 (+)
DescriptionSimilar to SRPP: Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001167 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009723 response to ethylene Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009832 plant-type cell wall biogenesis Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010054 trichoblast differentiation Biological Process
GO:0010286 heat acclimation Biological Process
GO:0016036 cellular response to phosphate starvation Biological Process
GO:0048316 seed development Biological Process
GO:0071365 cellular response to auxin stimulus Biological Process
GO:0071369 cellular response to ethylene stimulus Biological Process
GO:0072732 cellular response to calcium ion starvation Biological Process
GO:0080147 root hair cell development Biological Process
KEGG gene cross-reference
ath:AT1G54970
ath:AT3G62680
ath:AT4G02270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.682
Rank 1 · TkA01G556900 · TK1151
Endoplasmic reticulum0.147
Rank 2 · TkA01G556900 · TK1151
Cytoplasm0.114
Rank 3 · TkA01G556900 · TK1151
Cell membrane0.077
Rank 4 · TkA01G556900 · TK1151
Lysosome / Vacuole0.053
Rank 5 · TkA01G556900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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