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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G556040
Reference: TK1151 Chr: Chr01 Coordinates: 139777290-139781310 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1668 bp · TkA01G556040|TK1151|cDNA

ATGGTCGAAGACGAAGACCCGAAGTTTCAGATCTTAATCTGGCTATTGTATTCTTGTGAAGTTGAAGTAATCGGAGGTGAACATGCGTTTAGGAAGAGGAAGAAGGTCAAAGGTCAACGATTGGAGTTTGACTCCATGGATATAACAGAGATCTCGGATTTTACATGGAAATTGAAGCTCTTGAGGATCGATGCTGAGAAGCTCTCCCGTTCTCATGTTTGGGCTCTACTCCTCGACTGCGGCGCCACCGCCGCTTCTGT...

CDS

Download CDS FASTA

1668 bp · TkA01G556040|TK1151|CDS

ATGGTCGAAGACGAAGACCCGAAGTTTCAGATCTTAATCTGGCTATTGTATTCTTGTGAAGTTGAAGTAATCGGAGGTGAACATGCGTTTAGGAAGAGGAAGAAGGTCAAAGGTCAACGATTGGAGTTTGACTCCATGGATATAACAGAGATCTCGGATTTTACATGGAAATTGAAGCTCTTGAGGATCGATGCTGAGAAGCTCTCCCGTTCTCATGTTTGGGCTCTACTCCTCGACTGCGGCGCCACCGCCGCTTCTGT...

Protein

Download Protein FASTA

555 aa · TkA01G556040|TK1151|PROTEIN

MVEDEDPKFQILIWLLYSCEVEVIGGEHAFRKRKKVKGQRLEFDSMDITEISDFTWKLKLLRIDAEKLSRSHVWALLLDCGATAASVIDDRQWVPDTQFISTGTSRNLTQTNLPLRLSTVRSFPLLDNNSRRRKFCYVVPVYRTGKYLVRTTYYYGGVNNQASPPVFDQIVDGTFWSVVNTTEDYANRDASYYEGVFRAGGKSMSVCLASNTYTESDPFISALEFVLLADSLYNSTDFGSFSLRLVARHSFGYNGSNIRY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G556040
TK1151 IDTkA01G556040
OH-1004 IDLXL04_001193
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)84.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G556040
LocationChr01:139777290-139781310 (+)
DescriptionSimilar to At1g67720: Probable LRR receptor-like serine/threonine-protein kinase At1g67720
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g14510 Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510. No verified direct reference in this release
At1g51890 Probable LRR receptor-like protein kinase At1g51890. No verified direct reference in this release
At1g67720 Probable LRR receptor-like serine/threonine-protein kinase At1g67720. No verified direct reference in this release
At1g51880 Probable LRR receptor-like serine/threonine-protein kinase At1g51880. No verified direct reference in this release
At1g07550 Probable LRR receptor-like serine/threonine-protein kinase At1g07550. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001193 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G05700
ath:AT1G67720
ath:AT2G14510
ath:AT3G21340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.424
Rank 1 · TkA01G556040 · TK1151
Cell membrane0.289
Rank 2 · TkA01G556040 · TK1151
Endoplasmic reticulum0.114
Rank 3 · TkA01G556040 · TK1151
Cytoplasm0.083
Rank 4 · TkA01G556040 · TK1151
Lysosome / Vacuole0.051
Rank 5 · TkA01G556040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799LRR_448-61 aa
PF11721Malectin76-149 aa
PF12819Malectin_like78-398 aa
PF11721Malectin297-355 aa
PF08263LRRNT_2409-445 aa
PF12799LRR_4454-493 aa
PF00560LRR_1455-473 aa
PF23598LRR_14455-530 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G556040PF12799LRR_448615.4e-0524.0
TkA01G556040PF11721Malectin761490.001519.3
TkA01G556040PF12819Malectin_like783988.1e-65220.0
TkA01G556040PF11721Malectin2973550.001519.3
TkA01G556040PF08263LRRNT_24094450.0004621.1
TkA01G556040PF12799LRR_44544935.4e-0524.0
TkA01G556040PF00560LRR_14554732.5e-0627.2
TkA01G556040PF23598LRR_144555300.02813.9
TkA01G556040PF13855LRR_84615090.00716.8
TkA01G556040PF00560LRR_14764922.5e-0627.2
TkA01G556040PF13855LRR_84955330.00716.8
TkA01G556040PF00560LRR_14995192.5e-0627.2
TkA01G556040PF12799LRR_44995365.4e-0524.0
TkA01G556040PF00560LRR_15225412.5e-0627.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZQR3Arabidopsis thalianasp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g1451030.900%Swiss-ProtMedium
C0LGG6Arabidopsis thalianasp|C0LGG6|Y5189_ARATH Probable LRR receptor-like protein kinase At1g5189030.000%Swiss-ProtMedium
C0LGI2Arabidopsis thalianasp|C0LGI2|Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g6772030.300%Swiss-ProtMedium
Q9FZB1Arabidopsis thalianasp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5188029.500%Swiss-ProtLow
C0LGD8Arabidopsis thalianasp|C0LGD8|Y1755_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g0755027.600%Swiss-ProtLow

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