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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G549330
Reference: TK1151 Chr: Chr01 Coordinates: 138000115-138006479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3773 bp · TkA01G549330|TK1151|cDNA

CAAACACCAACTAAAACTTTCGTACCGCATGTGATATGCACGTGACGTAGGGTTTTAAGCTGTGTCGAAGGTTTTTGTTATGCTCACCGAGCTTCATTCGACGGAAGGGGATGGTTGAACACACACGGTGACACGCAAAAACCGCCTCCACCATGAAACCTCTCTCTTCCATCACCATCTTCCTCTGTTCTTCCTCACGCCGTCTCTTAGCCCGTACAACACCACTACCGTTTCTCAATTATGAAGCTGAAAAACTCGTC...

CDS

Download CDS FASTA

2247 bp · TkA01G549330|TK1151|CDS

ATGAAACCTCTCTCTTCCATCACCATCTTCCTCTGTTCTTCCTCACGCCGTCTCTTAGCCCGTACAACACCACTACCGTTTCTCAATTATGAAGCTGAAAAACTCGTCGGTATCTCCCATTTCTCAACCTCATCGTTGGACTCCCCAGCCTCCTCTTCCTATCATTCATCTTCAAGACGCAATCATGAGGATGTTAGAAACGTCAGGGTTTCCGTGTGGTGGGACTTCGAGAACTGCTCGATACCTTGTAACGTCAACGT...

Protein

Download Protein FASTA

748 aa · TkA01G549330|TK1151|PROTEIN

MKPLSSITIFLCSSSRRLLARTTPLPFLNYEAEKLVGISHFSTSSLDSPASSSYHSSSRRNHEDVRNVRVSVWWDFENCSIPCNVNVYKVTQCITAAVRSVGIKGPIQITAFGDVLQLSRSNQEALSSTGINLTHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLLLISGDRDFASILHRLRMNNYNILLASTDNAPAVLCSAASIMWQWPAIIKGENQNGKHFNQPPDGPYASWYGHYKVQLEDPFAVSNQTSWLQSEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G549330
TK1151 IDTkA01G549330
OH-1004 IDLXL04_001288
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.000
Protein coverage (%)TK1151 99.599 / OH-1004 86.784
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G549330
LocationChr01:138000115-138006479 (+)
DescriptionSimilar to MARF1: Meiosis regulator and mRNA stability factor 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001288 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006302 double-strand break repair Biological Process
GO:0007143 female meiotic nuclear division Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0016020 membrane Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0004540 RNA nuclease activity Molecular Function
GO:1905762 CCR4-NOT complex binding Molecular Function
KEGG gene cross-reference
hsa:9665
mmu:223989
rno:170946
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.327
Rank 1 · TkA01G549330 · TK1151
Cytoplasm0.293
Rank 2 · TkA01G549330 · TK1151
Plastid0.267
Rank 3 · TkA01G549330 · TK1151
Cell membrane0.114
Rank 4 · TkA01G549330 · TK1151
Mitochondrion0.066
Rank 5 · TkA01G549330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01936NYN69-205 aa
PF08784RPA_C257-306 aa
PF01628HrcA265-349 aa
PF12872OST-HTH269-336 aa
PF24359DUF7515270-319 aa
PF01936NYN283-311 aa
PF17002DUF5089435-516 aa
PF14418OHA446-472 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G549330PF01936NYN692055.9e-29102.2
TkA01G549330PF08784RPA_C2573060.03915.4
TkA01G549330PF01628HrcA2653490.2511.9
TkA01G549330PF12872OST-HTH2693367.2e-1761.7
TkA01G549330PF24359DUF75152703190.01416.3
TkA01G549330PF01936NYN2833115.9e-29102.2
TkA01G549330PF17002DUF50894355160.08213.4
TkA01G549330PF14418OHA4464722.6e-1144.0
TkA01G549330PF08784RPA_C4594850.03915.4
TkA01G549330PF08784RPA_C5515940.03915.4
TkA01G549330PF14418OHA5526152.6e-1144.0
TkA01G549330PF08784RPA_C6296570.03915.4
TkA01G549330PF12872OST-HTH6447037.2e-1761.7
TkA01G549330PF24359DUF75156586940.01416.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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