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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G548720
Reference: TK1151 Chr: Chr01 Coordinates: 137836564-137840051 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3412 bp · TkA01G548720|TK1151|cDNA

AAGACCCTTCTTCGGCCTCTTCTCATATACCCCACTTCCATTAGACTTCTCTCATCGTCTTCACAAACAACGAAACATGGAGGATTATATGGTTCTTTTTTCTGCACACTAATCTACCTTTTTCTCTCTCACAACCGTCTCTCCAAAGCAGCAAATGCCATCAGTGCCATGCGATATTACAAAATTTTTCCTGAAAGTTTACCCTCTTGTAATCGACTCCTTCGGGAATTGAACAACTCTGGGTTGGTTTCTCAGGTATG...

CDS

Download CDS FASTA

1719 bp · TkA01G548720|TK1151|CDS

AAGACCCTTCTTCGGCCTCTTCTCATATACCCCACTTCCATTAGACTTCTCTCATCGTCTTCACAAACAACGAAACATGGAGGATTATATGGTTCTTTTTTCTGCACACTAATCTACCTTTTTCTCTCTCACAACCGTCTCTCCAAAGCAGCAAATGCCATCAGTGCCATGCGATATTACAAAATTTTTCCTGAAAGTTTACCCTCTTGTAATCGACTCCTTCGGGAATTGAACAACTCTGGGTTGGTTTCTCAGGTATG...

Protein

Download Protein FASTA

572 aa · TkA01G548720|TK1151|PROTEIN

KTLLRPLLIYPTSIRLLSSSSQTTKHGGLYGSFFCTLIYLFLSHNRLSKAANAISAMRYYKIFPESLPSCNRLLRELNNSGLVSQVWFVYSEMIFCGVTPNVTTRNIVLHSLCKVGRVGLALDILRDTSCSESDVVSYNTVIWGFCKYGFVEQGFGLCSDMIKKGFTFDEFTCNILIKGFIDTGFLGYLEWILDQFCYKGIGYMDVVGFNTLIHWYSKSGNANGAIEMLNRMTKEESFPDIVTYNTLINMYCKMMNIPQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G548720
TK1151 IDTkA01G548720
OH-1004 IDLXL04_004885
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)30.100
Protein coverage (%)TK1151 25.000 / OH-1004 16.427
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G548720
LocationChr01:137836564-137840051 (+)
DescriptionSimilar to At1g13630: Putative pentatricopeptide repeat-containing protein At1g13630
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G13630
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.801
Rank 1 · TkA01G548720 · TK1151
Plastid0.100
Rank 2 · TkA01G548720 · TK1151
Nucleus0.051
Rank 3 · TkA01G548720 · TK1151
Cytoplasm0.032
Rank 4 · TkA01G548720 · TK1151
Cell membrane0.011
Rank 5 · TkA01G548720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24760TPR_IF140_C32-58 aa
PF01535PPR34-58 aa
PF23276TPR_2434-124 aa
PF13041PPR_236-64 aa
PF08579RPM262-114 aa
PF13041PPR_269-114 aa
PF01535PPR69-98 aa
PF13812PPR_370-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G548720PF24760TPR_IF140_C32584.3e-0524.6
TkA01G548720PF01535PPR34586.7e-80258.6
TkA01G548720PF23276TPR_24341241.1e-2281.1
TkA01G548720PF13041PPR_236641.4e-119390.8
TkA01G548720PF08579RPM2621147.6e-0523.8
TkA01G548720PF13041PPR_2691141.4e-119390.8
TkA01G548720PF01535PPR69986.7e-80258.6
TkA01G548720PF13812PPR_3701103.8e-56187.8
TkA01G548720PF29070MSC6_N711212.3e-29103.4
TkA01G548720PF17177PPR_long871822e-2693.4
TkA01G548720PF17177PPR_long881222e-2693.4
TkA01G548720PF12854PPR_1971267e-98320.7
TkA01G548720PF01535PPR1041266.7e-80258.6
TkA01G548720PF25586zf-CCCH_PAN31051144.17.9
TkA01G548720PF23276TPR_241081741.1e-2281.1
TkA01G548720PF12854PPR_11321617e-98320.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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