TkA01G546370 | RubberDandelionOmics

Gene overview

TkA01G546370

Reference: TK1151 Chr: Chr01 Coordinates: 137191322-137192806 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1157 bp · TkA01G546370|TK1151|cDNA

CGACAATGACGAAACTCATCATTAAATTGCTCTTCTTGGTGTCTATGGTGTCTTCTAAAGTTACCCTTAAGAATTTGGATTTCGAAACTCAACCAACAAATCTAACAACAAACGCCACATCTCAATTCATACTCCTCGATCCCAAAATCAACATGATTCCCGGTTGGAAGTTCAACGGTACGGTTTGGTATGTAACAGCTGGCGGAAATGTTTCATTGCCTGGAAATGGTCACGGATTGCAATTGGGTCCAAACGGTATG...

CDS

Download CDS FASTA

1002 bp · TkA01G546370|TK1151|CDS

ATGACGAAACTCATCATTAAATTGCTCTTCTTGGTGTCTATGGTGTCTTCTAAAGTTACCCTTAAGAATTTGGATTTCGAAACTCAACCAACAAATCTAACAACAAACGCCACATCTCAATTCATACTCCTCGATCCCAAAATCAACATGATTCCCGGTTGGAAGTTCAACGGTACGGTTTGGTATGTAACAGCTGGCGGAAATGTTTCATTGCCTGGAAATGGTCACGGATTGCAATTGGGTCCAAACGGTATGATTAA...

Protein

Download Protein FASTA

333 aa · TkA01G546370|TK1151|PROTEIN

MTKLIIKLLFLVSMVSSKVTLKNLDFETQPTNLTTNATSQFILLDPKINMIPGWKFNGTVWYVTAGGNVSLPGNGHGLQLGPNGMINQTFKPDGSYDYVLTFTLAPSSPDCANNSTIVNVSGPSATEVFFFKESLGTEMWQTYAYSLWREQTQKSLMSVKIQSTATTNSNNVTCWPIIDTILVTGIESPRMYSDNGFVNSGFEVGPTFLKNSTQGVLLEADSSYRFSSVVQSPLQSWTILGIVKYIDSKHYAVPRGRGAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G546370`
TK1151 ID	TkA01G546370
OH-1004 ID	LXL04_011683
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.300
Protein coverage (%)	TK1151 26.727 / OH-1004 55.280 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G546370

Location Chr01:137191322-137192806 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41800`	Prevents hypocotyl epidermal cells elongation by modulating the pectin status in cell walls.	Cell Wall Localization of Two DUF642 Proteins, BIIDXI and TEEBE, during Meloidogyne incognita Early Inoculation.2017 · DOI: 10.5423/ppj.nt.05.2017.0101

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011683 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0009630 gravitropism Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009845 seed germination Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0048598 embryonic morphogenesis Biological Process

GO:0048608 reproductive structure development Biological Process

KEGG gene cross-reference

ath:AT1G80240

ath:AT2G41800

ath:AT4G32460

ath:AT5G11420

ath:AT5G25460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.454

Rank 1 · TkA01G546370 · TK1151

Cell membrane0.182

Rank 2 · TkA01G546370 · TK1151

Cytoplasm0.135

Rank 3 · TkA01G546370 · TK1151

Endoplasmic reticulum0.117

Rank 4 · TkA01G546370 · TK1151

Lysosome / Vacuole0.101

Rank 5 · TkA01G546370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04862DUF64220-183 aa

PF04862DUF642231-331 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G546370	`PF04862`	DUF642	20	183	3e-35	122.0
TkA01G546370	`PF04862`	DUF642	231	331	3e-35	122.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22940`	Arabidopsis thaliana	sp\|O22940\|TEEBE_ARATH Protein TEEBE	28.600%	Swiss-Prot	Low

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