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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G544760
Reference: TK1151 Chr: Chr01 Coordinates: 136672896-136675297 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1846 bp · TkA01G544760|TK1151|cDNA

AAAATATGGAAAAAAGAAGTGTATAGTTAAAAAGAAGATTTATCATTTATAGCATCTGGTAGACATGATTCTCCGTCTTCACGCAAATTGGCCTCCATTTTTTGACAGTTCAGCTCCAGCCTCTCCCTCCCCACACCAAAATCACCATCACCACCACCTCCATCTCCACTTTTTTTTACCAATCTCATCCACACAATCGACGCCGCCATTTACCATTATCTTCTTCCTTTTGCTACTTGTTCCAATTTCTCTTAACTCTC...

CDS

Download CDS FASTA

1149 bp · TkA01G544760|TK1151|CDS

ATGAGGCGATCTAGACACAACAATGCATTGCAAGTCCAAGACGATTGGCCAATCAGAAAGGCCCTCACACTTTCAGACGTTGACATAACCCACCCCTTCCTCACCCTCCCTCGCCAACCTGTCGAAACGTACATCCTTGTCCACCTGTCACAGCTAGAACGCGACCACCTACTAAACCGCGAACAAGTAGCCATCAATGCCCACGATGATGACACTGGCGACCTTTATGTAATGAAGTTAAAATGGCGGGGAAGTTACTA...

Protein

Download Protein FASTA

382 aa · TkA01G544760|TK1151|PROTEIN

MRRSRHNNALQVQDDWPIRKALTLSDVDITHPFLTLPRQPVETYILVHLSQLERDHLLNREQVAINAHDDDTGDLYVMKLKWRGSYYNLIGKWGRIVRSKGLDVGKEIKIRWFNGCLHFSVPQQQVLAIPPLQIIPAPVPHHDQWPIRKVLTLSDVDTNHPFLPLARRSVEDHILVHWTPQQRELLRNEEQVNLNARDVDTGDIYVMKLRWRGNYYNLIGKWGKIIRSKGLGVGKEIKIRWANGCLHFSVPYEQTVVPTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G544760
TK1151 IDTkA01G544760
OH-1004 IDLXL04_001347
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 95.750
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G544760
LocationChr01:136672896-136675297 (+)
DescriptionSimilar to At3g28853: Putative B3 domain-containing protein At3g28853
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001347 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G28853
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.586
Rank 1 · TkA01G544760 · TK1151
Nucleus0.529
Rank 2 · TkA01G544760 · TK1151
Cell membrane0.053
Rank 3 · TkA01G544760 · TK1151
Endoplasmic reticulum0.049
Rank 4 · TkA01G544760 · TK1151
Extracellular0.040
Rank 5 · TkA01G544760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF31239At5g26805_C16-121 aa
PF03754At2g31720-like18-119 aa
PF01477PLAT68-86 aa
PF08845SymE_toxin100-117 aa
PF31239At5g26805_C145-250 aa
PF25633Anula_coat158-198 aa
PF11390FdsD166-186 aa
PF01477PLAT175-216 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G544760PF31239At5g26805_C161213.9e-39134.3
TkA01G544760PF03754At2g31720-like181191.5e-0938.5
TkA01G544760PF01477PLAT68860.002719.1
TkA01G544760PF08845SymE_toxin1001170.0009719.9
TkA01G544760PF31239At5g26805_C1452503.9e-39134.3
TkA01G544760PF25633Anula_coat1581980.2312.1
TkA01G544760PF11390FdsD1661860.05914.4
TkA01G544760PF01477PLAT1752160.002719.1
TkA01G544760PF03754At2g31720-like1932411.5e-0938.5
TkA01G544760PF08845SymE_toxin2262460.0009719.9
TkA01G544760PF31239At5g26805_C2753783.9e-39134.3
TkA01G544760PF03754At2g31720-like2763691.5e-0938.5
TkA01G544760PF25633Anula_coat2883290.2312.1
TkA01G544760PF11390FdsD2983180.05914.4
TkA01G544760PF01477PLAT3213430.002719.1
TkA01G544760PF08845SymE_toxin3593790.0009719.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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