RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G544250
Reference: TK1151 Chr: Chr01 Coordinates: 136523042-136527703 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1094 bp · TkA01G544250|TK1151|cDNA

GGGGGTGGGATTGTGTAGTGTTACGATGCTAGTAAGATAAGAAATGGGTCCGGGTCGGGGTCAACCGGTCAAGGGTCATTGTCAATAGAATTTGTAAATGGCCACTCTTCTACACCACTCATTTTGCACCTTGTCACATGAAAATACAAAAACATCAATGCATTAAAGGTCCTCTCATAACAACACAATTCTTCATCAATATCACATGGAATAATTCCAAAGGACCACCATCACAACCACCACCACAATCTCCATCGTCA...

CDS

Download CDS FASTA

2523 bp · TkA01G544250|TK1151|CDS

ATGGAAACAAAGCAACCAAAGTTCACAACGGTGTACAACACCTTGCATGCTACCGTATCAGACAATCAAAAAATGAAAGATCGATATAAAGATTCAAGGAAAGAGGAAGAAGAAGAAGAAGAAGAACAACATATCAATTTGAGGAGCTTGTCAAAGATTATGATCCCTCCGTTGGGTGCTTCATATATACAAAACCATATTCCCTCAAGATCCACCATCATCATATCACCCATGGACTCCAAATATAGGTATTGGCAGAC...

Protein

Download Protein FASTA

840 aa · TkA01G544250|TK1151|PROTEIN

METKQPKFTTVYNTLHATVSDNQKMKDRYKDSRKEEEEEEEEQHINLRSLSKIMIPPLGASYIQNHIPSRSTIIISPMDSKYRYWQTLMVVMVAYSAWTYPFEVAFLKSSAQTHKQLYIADSIVDLFFTADIILTFFVAYVDPITHLLVRDPKSIATRYLSTWFVMDLASTLPFELISYLFTGKHRMGLPYTVLGLLRFWRLRRVKQFFTRIEKDIRFNYFWVRCARLLCVTLFLVHCAGCIYYLLAVLYPHEGRTWIAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G544250
TK1151 IDTkA01G544250
OH-1004 IDLXL04_001355
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G544250
LocationChr01:136523042-136527703 (+)
DescriptionSimilar to AKT2: Potassium channel AKT2/3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g22200 Highly selective and weak inward-rectifying potassium channel.
Loss of the AKT2/3 potassium channel affects sugar loading into the phloem of Arabidopsis.2002 · DOI: 10.1007/s00425-002-0895-1
Regulated expression of Arabidopsis shaker K+ channel genes involved in K+ uptake and distribution in the plant.2003 · DOI: 10.1023/a:1022597102282
At2g26650 May act as a highly selective inward-rectifying potassium channel mediating root potassium uptake under low K⁺ conditions.
Regulated expression of Arabidopsis shaker K+ channel genes involved in K+ uptake and distribution in the plant.2003 · DOI: 10.1023/a:1022597102282
A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.2006 · DOI: 10.1016/j.cell.2006.06.011
A Ca(2)+ signaling pathway regulates a K(+) channel for low-K response in Arabidopsis.2006 · DOI: 10.1073/pnas.0605129103
A protein phosphorylation/dephosphorylation network regulates a plant potassium channel.2007 · DOI: 10.1073/pnas.0707912104
High-affinity K(+) transport in Arabidopsis: AtHAK5 and AKT1 are vital for seedling establishment and postgermination growth under low-potassium conditions.2010 · DOI: 10.1104/pp.110.154369
A role for the AKT1 potassium channel in plant nutrition.1998 · DOI: 10.1126/science.280.5365.918
At4g32500 Probable potassium channel. No verified direct reference in this release
At2g25600 Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane.
Pollen tube development and competitive ability are impaired by disruption of a Shaker K(+) channel in Arabidopsis.2002 · DOI: 10.1101/gad.213902

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0428700 Probable inward-rectifying potassium channel. No verified direct reference in this release
UniProt: P0C550 Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. No verified direct reference in this release
Os02g0245800 Probable inward-rectifying potassium channel. No verified direct reference in this release
Os01g0210700 Probable inward-rectifying potassium channel. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001355 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006813 potassium ion transport Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0042391 regulation of membrane potential Biological Process
GO:0048767 root hair elongation Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:1990573 potassium ion import across plasma membrane Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT2G26650
ath:AT4G22200
ath:AT4G32500
dosa:Os01g0648000
dosa:Os05g0428700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.731
Rank 1 · TkA01G544250 · TK1151
Cytoplasm0.160
Rank 2 · TkA01G544250 · TK1151
Endoplasmic reticulum0.107
Rank 3 · TkA01G544250 · TK1151
Lysosome / Vacuole0.059
Rank 4 · TkA01G544250 · TK1151
Golgi apparatus0.057
Rank 5 · TkA01G544250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01007IRK76-100 aa
PF00520Ion_trans82-333 aa
PF01007IRK239-322 aa
PF07885Ion_trans_2242-327 aa
PF00027cNMP_binding425-509 aa
PF12796Ank_2499-519 aa
PF00023Ank501-524 aa
PF24521Ank_KRIT1553-637 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G544250PF01007IRK761003.48.2
TkA01G544250PF00520Ion_trans823331.9e-45155.7
TkA01G544250PF01007IRK2393223.48.2
TkA01G544250PF07885Ion_trans_22423277e-1349.0
TkA01G544250PF00027cNMP_binding4255093.7e-1659.6
TkA01G544250PF12796Ank_24995191.6e-2590.2
TkA01G544250PF00023Ank5015242.6e-2072.1
TkA01G544250PF24521Ank_KRIT15536370.04514.2
TkA01G544250PF13606Ank_35555777.6e-1348.0
TkA01G544250PF12796Ank_25596381.6e-2590.2
TkA01G544250PF00023Ank5615812.6e-2072.1
TkA01G544250PF13637Ank_45676044.8e-1556.0
TkA01G544250PF13857Ank_55706211.1e-1764.6
TkA01G544250PF23745ANK_LRRK25746060.1113.1
TkA01G544250PF00023Ank5846142.6e-2072.1
TkA01G544250PF13606Ank_35846117.6e-1348.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38898Arabidopsis thalianasp|Q38898|AKT2_ARATH Potassium channel AKT2/364.700%Swiss-ProtHigh
Q38998Arabidopsis thalianasp|Q38998|AKT1_ARATH Potassium channel AKT141.500%Swiss-ProtMedium
Q9SCX5Arabidopsis thalianasp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT538.200%Swiss-ProtMedium
Q8GXE6Arabidopsis thalianasp|Q8GXE6|AKT6_ARATH Potassium channel AKT649.600%Swiss-ProtMedium
Q75HP9Oryza sativa subsp. japonicasp|Q75HP9|AKT2_ORYSJ Potassium channel AKT253.900%Swiss-ProtHigh
P0C550Oryza sativa subsp. indicasp|P0C550|AKT1_ORYSI Potassium channel AKT143.100%Swiss-ProtMedium
Q6K3T2Oryza sativa subsp. japonicasp|Q6K3T2|KAT1_ORYSJ Potassium channel KAT151.400%Swiss-ProtMedium
Q5QNI1Oryza sativa subsp. japonicasp|Q5QNI1|KAT2_ORYSJ Potassium channel KAT250.500%Swiss-ProtMedium

JBrowse

View in Genome Browser