TkA01G540810 | RubberDandelionOmics

Gene overview

TkA01G540810

Reference: TK1151 Chr: Chr01 Coordinates: 135640164-135644204 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1228 bp · TkA01G540810|TK1151|cDNA

ATGAAATAGTCATATTCTAAATTAATTGTATAATTGAGGCACATGCAACTCCAACTTCCACTTCAACCATAGCAACACCATCTTCATTCTTCAACCTTCACAGACATGACCAAGGTGAAAACGCCCACACGAACTATAGGGAGAATGAAGAACATGCTTATAGCCATGTTTATAATAATCGGCATTTCAGAAGCTAGACTGAAAGTAGGGTTCTACAAAAAAACATGCCCAGATGCGGAATCCATTGTTGGTGGATTTTT...

CDS

Download CDS FASTA

1005 bp · TkA01G540810|TK1151|CDS

ATGACCAAGGTGAAAACGCCCACACGAACTATAGGGAGAATGAAGAACATGCTTATAGCCATGTTTATAATAATCGGCATTTCAGAAGCTAGACTGAAAGTAGGGTTCTACAAAAAAACATGCCCAGATGCGGAATCCATTGTTGGTGGATTTTTAAGGGATGCAGCTCAGTTTAACCAACAAATTGCCGCTATCATGCTCAGGCTTCACTTTCATGACTGCTTCGTTCAGGGTTGTGATGGGTCAATTTTGATAGATAA...

Protein

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334 aa · TkA01G540810|TK1151|PROTEIN

MTKVKTPTRTIGRMKNMLIAMFIIIGISEARLKVGFYKKTCPDAESIVGGFLRDAAQFNQQIAAIMLRLHFHDCFVQGCDGSILIDNGPISEKLADGHQGVKGFDVIENAKAQLEFVCPGVVSCADIVAIAARDAVALTFGPIYEVETGRRDGFVSNISLADNMPDFRDSIQLLKQKFFRKGLTEKDLVVLTGAHTIGSTACFFLMDRLYNFVPGGGPDPSINPDFLQELMDNCPPQGDINFRLPIDHDGGENFDNSILQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G540810`
TK1151 ID	TkA01G540810
OH-1004 ID	LXL04_002679
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	46.600
Protein coverage (%)	TK1151 93.114 / OH-1004 90.087 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G540810

Location Chr01:135640164-135644204 (+)

Description Similar to PER25: Peroxidase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25980`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g77100`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g41480`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002679 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009808 lignin metabolic process Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0045730 respiratory burst Biological Process

GO:0048511 rhythmic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

KEGG gene cross-reference

ath:AT2G41480

ath:AT5G39580

ath:AT5G64120

nta:107773042

nta:107803841

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.337

Rank 1 · TkA01G540810 · TK1151

Extracellular0.304

Rank 2 · TkA01G540810 · TK1151

Cytoplasm0.126

Rank 3 · TkA01G540810 · TK1151

Endoplasmic reticulum0.090

Rank 4 · TkA01G540810 · TK1151

Cell membrane0.061

Rank 5 · TkA01G540810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase51-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G540810	`PF00141`	peroxidase	51	288	5.8e-72	243.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZH2`	Arabidopsis thaliana	sp\|Q9SZH2\|PER43_ARATH Peroxidase 43	59.900%	Swiss-Prot	High
`O49293`	Arabidopsis thaliana	sp\|O49293\|PER13_ARATH Peroxidase 13	52.800%	Swiss-Prot	High
`O80822`	Arabidopsis thaliana	sp\|O80822\|PER25_ARATH Peroxidase 25	45.400%	Swiss-Prot	Medium

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