TkA01G537960 | RubberDandelionOmics

Gene overview

TkA01G537960

Reference: TK1151 Chr: Chr01 Coordinates: 134905373-134906000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

459 bp · TkA01G537960|TK1151|cDNA

GTTTACTTCTGGGAAGCCAAGGGCCAGAATCCCGTGTTTCCTCGAATTTTAGGACATGAAGCGGGAGGTGTTGTGGAGAGTGTTGGGGAAGGAGTTACTGATCTTCAGCCGGGAGACCACGTTCTCCCTGTTTTCACCGGAGAATGCAAAGAATGTGCTCACTGTAAGTCGGAAGAGAGCAACATGTATGATCTTCTGAGAATCAACACCGACAGAGGAGTCATGATTCACGATCAAACATCTCGATTTTCCATTAACGG...

CDS

Download CDS FASTA

459 bp · TkA01G537960|TK1151|CDS

GTTTACTTCTGGGAAGCCAAGGGCCAGAATCCCGTGTTTCCTCGAATTTTAGGACATGAAGCGGGAGGTGTTGTGGAGAGTGTTGGGGAAGGAGTTACTGATCTTCAGCCGGGAGACCACGTTCTCCCTGTTTTCACCGGAGAATGCAAAGAATGTGCTCACTGTAAGTCGGAAGAGAGCAACATGTATGATCTTCTGAGAATCAACACCGACAGAGGAGTCATGATTCACGATCAAACATCTCGATTTTCCATTAACGG...

Protein

Download Protein FASTA

152 aa · TkA01G537960|TK1151|PROTEIN

VYFWEAKGQNPVFPRILGHEAGGVVESVGEGVTDLQPGDHVLPVFTGECKECAHCKSEESNMYDLLRINTDRGVMIHDQTSRFSINGKRIFHFVGTSTFSEYTVVHVSCLAKINPLAPLDKVCILSCGISTCTTTNHNHRSPITIPDNIFLT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G537960`
TK1151 ID	TkA01G537960
OH-1004 ID	LXL04_029921
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 100.000 / OH-1004 25.632 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G537960

Location Chr01:134905373-134906000 (-)

Description Similar to ADH2: Alcohol dehydrogenase 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q75ZX4`	Alcohol dehydrogenase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029921 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0046294 formaldehyde catabolic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function

KEGG gene cross-reference

mdm:103428551

sly:544074

sot:102577519

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.306

Rank 1 · TkA01G537960 · TK1151

Peroxisome0.212

Rank 2 · TkA01G537960 · TK1151

Mitochondrion0.134

Rank 3 · TkA01G537960 · TK1151

Plastid0.110

Rank 4 · TkA01G537960 · TK1151

Nucleus0.090

Rank 5 · TkA01G537960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240ADH_N9-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G537960	`PF08240`	ADH_N	9	113	2.2e-14	54.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q75ZX4`	Oryza sativa subsp. indica	sp\|Q75ZX4\|ADH1_ORYSI Alcohol dehydrogenase 1	87.800%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card