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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G533980
Reference: TK1151 Chr: Chr01 Coordinates: 134023077-134025516 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1966 bp · TkA01G533980|TK1151|cDNA

GATGAATCTCAGGTTCCTTTTGTAGCTTCGTTTTGAACTTCGGAAACTCGATTCTTGCTTTTCCAACACTTTGATTGCCGAGTTTCTTGTACGATTAAAGGAAACCTTGAGACTTATTACATACCATGACAGACTTAAAGAGAATGGATGTTCATGAAGCACTAGACAAAGCTAGAGCAGAAAATGAGAGTCTCAAGGAAGAAATTCGTACCAAAACAGATCTCTACAACAACTTAAGAAAATCTCAAATCGAATTGGTA...

CDS

Download CDS FASTA

1719 bp · TkA01G533980|TK1151|CDS

ATGACAGACTTAAAGAGAATGGATGTTCATGAAGCACTAGACAAAGCTAGAGCAGAAAATGAGAGTCTCAAGGAAGAAATTCGTACCAAAACAGATCTCTACAACAACTTAAGAAAATCTCAAATCGAATTGGTAACTAAGTTTCAAGAATCAAAACTGCAATCTGAAAAACAAGCCCTAGAACTCAATTCAAAGTCCGAGGAGATGATAAACAAACTGGAAGAGAAGCTTAGAGACACTGAAGATCAACTCAAGTGGAA...

Protein

Download Protein FASTA

572 aa · TkA01G533980|TK1151|PROTEIN

MTDLKRMDVHEALDKARAENESLKEEIRTKTDLYNNLRKSQIELVTKFQESKLQSEKQALELNSKSEEMINKLEEKLRDTEDQLKWKNEQFQHLEEAHERLQVSFQSHKTEWEKEKSLLLEEISSIQSSLDSQIRMSESLQTQLKICNQALAHEESTRKLLEVEVSEYKSRFDNIFLECNEAKLTIEKLTHKRDEEVAELRDTLSTKDSLSKEMGYKITHLEQENQDLTASLKEFQESLIVKCGPTNSLKKLQKRYQDLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G533980
TK1151 IDTkA01G533980
OH-1004 IDLXL04_014008
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)33.000
Protein coverage (%)TK1151 27.273 / OH-1004 24.566
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G533980
LocationChr01:134023077-134025516 (+)
DescriptionSimilar to At4g38062: Uncharacterized protein At4g38062
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38062 Uncharacterized protein At4g38062. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014008 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT4G38062
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA01G533980 · TK1151
Nucleus0.221
Rank 2 · TkA01G533980 · TK1151
Golgi apparatus0.173
Rank 3 · TkA01G533980 · TK1151
Endoplasmic reticulum0.058
Rank 4 · TkA01G533980 · TK1151
Cell membrane0.056
Rank 5 · TkA01G533980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19220Rod_CreS11-167 aa
PF24161CCDC3913-54 aa
PF30964At4g38062_N19-70 aa
PF30966At4g38062_C36-153 aa
PF24161CCDC3958-116 aa
PF30964At4g38062_N67-310 aa
PF24161CCDC39113-195 aa
PF30966At4g38062_C120-328 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G533980PF19220Rod_CreS111670.4110.5
TkA01G533980PF24161CCDC3913540.002416.5
TkA01G533980PF30964At4g38062_N19701.3e-104351.0
TkA01G533980PF30966At4g38062_C361532e-2280.5
TkA01G533980PF24161CCDC39581160.002416.5
TkA01G533980PF30964At4g38062_N673101.3e-104351.0
TkA01G533980PF24161CCDC391131950.002416.5
TkA01G533980PF30966At4g38062_C1203282e-2280.5
TkA01G533980PF19220Rod_CreS1492380.4110.5
TkA01G533980PF12053Par3_HAL_N_term1751930.0003621.4
TkA01G533980PF24161CCDC391993220.002416.5
TkA01G533980PF19220Rod_CreS2484510.4110.5
TkA01G533980PF30966At4g38062_C2655702e-2280.5
TkA01G533980PF24161CCDC393264420.002416.5
TkA01G533980PF30964At4g38062_N3324941.3e-104351.0
TkA01G533980PF12053Par3_HAL_N_term4194700.0003621.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0CB23Arabidopsis thalianasp|P0CB23|Y4862_ARATH Uncharacterized protein At4g3806250.000%Swiss-ProtLow

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