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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G530860
Reference: TK1151 Chr: Chr01 Coordinates: 133240248-133251596 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1131 bp · TkA01G530860|TK1151|cDNA

TTCCAATACCCTAGTTAAAATCGAGAAATCAGAGTGGGGGTTTCTCTTGTTTCGTACGGTGGTGAGTATTGAAGTCAGTGTGTCATCATGAGGATAGCTCCTCCTCCGGTAGCCGTCGCATTCGCCGCCACGCCGGAAGAAGACGTCTTCGACTCCGTACGAACTGGCGCCGCACAGCTGAATGTTGGTGGATCAGGTCTCCGCAAAAAGGCTACCGGAGTCAGGCCATGGCTCCTCCTCGATTCTACCGGCCAGGCTCA...

CDS

Download CDS FASTA

1458 bp · TkA01G530860|TK1151|CDS

ATGAGGATAGCTCCTCCTCCGGTAGCCGTCGCATTCGCCGCCACGCCGGAAGAAGACGTCTTCGACTCCGTACGAACTGGCGCCGCACAGCTGAATGTTGGTGGATCAGGTCTCCGCAAAAAGGCTACCGGAGTCAGGCCATGGCTCCTGCTCGATTCAACCGGTCAGGCTCAAATGATCGAAGCCGGCAAGCACGCTATCATGCGCCGCACTGGGCTACCTGCGCGCGATCTCCGCATCCTAGACCCGATCCTATCTTA...

Protein

Download Protein FASTA

485 aa · TkA01G530860|TK1151|PROTEIN

MRIAPPPVAVAFAATPEEDVFDSVRTGAAQLNVGGSGLRKKATGVRPWLLLDSTGQAQMIEAGKHAIMRRTGLPARDLRILDPILSYPSTVLGRERAIVINLEHIKAIITAQEVLLLNSKDPSVTPFVDELQRRILRHHQATSQEGMVDGDTDWTHLYDLGEPRSREVSPPRVSASIPERSHEFKPDGKHSFDKRDGPKLLPFEFIALEACLEAACSTLDNEARTLEQEAHPALDKLTSKISTLNLERVRQIKSRSVAIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G530860
TK1151 IDTkA01G530860
OH-1004 IDLXL04_017310
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.800
Protein coverage (%)TK1151 97.938 / OH-1004 97.605
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G530860
LocationChr01:133240248-133251596 (-)
DescriptionSimilar to MRS2-3: Magnesium transporter MRS2-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19640 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
At1g16010 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2WY50 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
Os01g0908500 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
UniProt: A2WXD3 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
Os01g0869200 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017310 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015693 magnesium ion transport Biological Process
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0015095 magnesium ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G19640
dosa:Os01g0869200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.461
Rank 1 · TkA01G530860 · TK1151
Cytoplasm0.146
Rank 2 · TkA01G530860 · TK1151
Endoplasmic reticulum0.131
Rank 3 · TkA01G530860 · TK1151
Lysosome / Vacuole0.114
Rank 4 · TkA01G530860 · TK1151
Nucleus0.112
Rank 5 · TkA01G530860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22099MRS2-like51-136 aa
PF01544CorA98-139 aa
PF22099MRS2-like198-295 aa
PF16740SKA2208-307 aa
PF04513Baculo_PEP_C208-245 aa
PF21811RdfA209-256 aa
PF26052BRE1B211-276 aa
PF07889DUF1664211-294 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G530860PF22099MRS2-like511364.4e-37128.3
TkA01G530860PF01544CorA981390.0003520.7
TkA01G530860PF22099MRS2-like1982954.4e-37128.3
TkA01G530860PF16740SKA22083070.6610.5
TkA01G530860PF04513Baculo_PEP_C2082456.07.6
TkA01G530860PF21811RdfA2092560.2212.0
TkA01G530860PF26052BRE1B2112760.212.2
TkA01G530860PF07889DUF16642112940.9610.2
TkA01G530860PF01544CorA2122830.0003520.7
TkA01G530860PF04513Baculo_PEP_C2502956.07.6
TkA01G530860PF25976LpqB_N2753100.2312.6
TkA01G530860PF21811RdfA2983660.2212.0
TkA01G530860PF22099MRS2-like3574034.4e-37128.3
TkA01G530860PF01544CorA3684370.0003520.7
TkA01G530860PF07889DUF16643733950.9610.2
TkA01G530860PF04513Baculo_PEP_C3744006.07.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJN2Arabidopsis thalianasp|Q9LJN2|MRS23_ARATH Magnesium transporter MRS2-367.000%Swiss-ProtHigh
Q9S9N4Arabidopsis thalianasp|Q9S9N4|MRS21_ARATH Magnesium transporter MRS2-148.600%Swiss-ProtMedium
A2WY50Oryza sativa subsp. indicasp|A2WY50|MRS2F_ORYSI Magnesium transporter MRS2-F53.400%Swiss-ProtHigh
Q8L4S2Oryza sativa subsp. japonicasp|Q8L4S2|MRS2F_ORYSJ Magnesium transporter MRS2-F53.400%Swiss-ProtHigh
A2WXD3Oryza sativa subsp. indicasp|A2WXD3|MRS2E_ORYSI Magnesium transporter MRS2-E47.100%Swiss-ProtMedium
Q8S1N1Oryza sativa subsp. japonicasp|Q8S1N1|MRS2E_ORYSJ Magnesium transporter MRS2-E47.100%Swiss-ProtMedium

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