TkA01G530600 | RubberDandelionOmics

Gene overview

TkA01G530600

Reference: TK1151 Chr: Chr01 Coordinates: 133173372-133175368 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1609 bp · TkA01G530600|TK1151|cDNA

CTAATGGAAAGTTGAACCGGGATCTGTTTATATACATCGCACCACACCCTCCATACCATAGTTCAATCGCTCTCGCCGTTGATCCATCTTTCACCAATAAAACATCTTTTTTCACTCCATCTTAAACACACACACACACACAACACGCAGACTCAAAAAAAGATAATTAGAAACATGTCGTCTCCTAAACCGTAAGCCATGTGTACCTCCCCTTCCACCACTACCACTACCCCGACAACCACCACCACCACTACTCTACC...

CDS

Download CDS FASTA

960 bp · TkA01G530600|TK1151|CDS

ATGCCCGACAACTCGGTATCTAGTCTTTTTTTCTCCGCCGCCGCCGCCGCCAACCACCAGTCACCATGGATCCAAGACTCTGTTATCGACTCACTCATCGCCGCAGAACCTCATCACTCTCCACTTCCTGACTACCTTCTCCGATGCCAGCGCCGCTCCGTCAGCCTCACCCTCCGGCAGGATTCCATCAACTGGATTCTTAACGCTCACTCACATTATCATTTTCAACCGATAACCGCCATTCTTTCCGTCAATTACTT...

Protein

Download Protein FASTA

319 aa · TkA01G530600|TK1151|PROTEIN

MPDNSVSSLFFSAAAAANHQSPWIQDSVIDSLIAAEPHHSPLPDYLLRCQRRSVSLTLRQDSINWILNAHSHYHFQPITAILSVNYFDRFLSSSSASFLGNNGWAFQLLAVACLSLAAKMEETDVPLLLDLQVLESPFIFEPKSVQRMELLVMAKLNWRLRSVTPFDFISYFVFKLPPSFRPDELHFHSKCSDLIVKTIRVIDFLGFRPSVIAAAAVISAAGDGVDVPESYYEKETVRSCHQLMEEYLVDTCPSADHKVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G530600`
TK1151 ID	TkA01G530600
OH-1004 ID	LXL04_001499
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G530600

Location Chr01:133173372-133175368 (+)

Description Similar to CYCD1-1: Cyclin-D1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70210`	May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.	No verified direct reference in this release
`At5g65420`	May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.	No verified direct reference in this release
`At2g22490`	Acts on the G1 phase of the cell cycle to control cell division rate in both shoot and root meristems.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0620800`	Cyclin-D2-2.	No verified direct reference in this release
`Os09g0466100`	Cyclin-D4-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001499 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0009744 response to sucrose Biological Process

GO:0010440 stomatal lineage progression Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G70210

ath:AT5G65420

dosa:Os07g0620800

dosa:Os09g0382300

dosa:Os09g0466100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · TkA01G530600 · TK1151

Cytoplasm0.108

Rank 2 · TkA01G530600 · TK1151

Cell membrane0.018

Rank 3 · TkA01G530600 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA01G530600 · TK1151

Plastid0.011

Rank 5 · TkA01G530600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134Cyclin_N28-161 aa

PF02984Cyclin_C163-262 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G530600	`PF00134`	Cyclin_N	28	161	2.5e-28	99.0
TkA01G530600	`PF02984`	Cyclin_C	163	262	8.4e-09	36.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42751`	Arabidopsis thaliana	sp\|P42751\|CCD11_ARATH Cyclin-D1-1	44.200%	Swiss-Prot	Medium
`Q8LGA1`	Arabidopsis thaliana	sp\|Q8LGA1\|CCD41_ARATH Cyclin-D4-1	38.000%	Swiss-Prot	Medium
`P42752`	Arabidopsis thaliana	sp\|P42752\|CCD21_ARATH Cyclin-D2-1	40.700%	Swiss-Prot	Medium
`Q8LHA8`	Oryza sativa subsp. japonica	sp\|Q8LHA8\|CCD22_ORYSJ Cyclin-D2-2	40.800%	Swiss-Prot	Medium
`Q6YXH8`	Oryza sativa subsp. japonica	sp\|Q6YXH8\|CCD41_ORYSJ Cyclin-D4-1	42.900%	Swiss-Prot	Medium

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