TkA01G528120 | RubberDandelionOmics

Gene overview

TkA01G528120

Reference: TK1151 Chr: Chr01 Coordinates: 132554940-132555494 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · TkA01G528120|TK1151|cDNA

GTAGACCAAAAGCTATCTCAAGGATGCTCTGTTTTATATGTGGCATTCGGTAGTCAAGTTGAGATATCGACACAACAGGATCTACAGGAAAAAGTGGGAGAAAGAGGGATTATCGTACGAGAATGGGTGGACCAAAGGGAGATTCTGAAGCACGAAAGCGTAAAAGGATTTGTAAGCCACTGTGGTTTGAATTCGGTAATGGAGAGCATATGTTCGGAGGTGCCGATACTAGCTTGGCCGATGATGGCTGATCAACACCT...

CDS

Download CDS FASTA

462 bp · TkA01G528120|TK1151|CDS

GTAGACCAAAAGCTATCTCAAGGATGCTCTGTTTTATATGTGGCATTCGGTAGTCAAGTTGAGATATCGACACAACAGGATCTACAGGAAAAAGTGGGAGAAAGAGGGATTATCGTACGAGAATGGGTGGACCAAAGGGAGATTCTGAAGCACGAAAGCGTAAAAGGATTTGTAAGCCACTGTGGTTTGAATTCGGTAATGGAGAGCATATGTTCGGAGGTGCCGATACTAGCTTGGCCGATGATGGCTGATCAACACCT...

Protein

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153 aa · TkA01G528120|TK1151|PROTEIN

VDQKLSQGCSVLYVAFGSQVEISTQQDLQEKVGERGIIVREWVDQREILKHESVKGFVSHCGLNSVMESICSEVPILAWPMMADQHLNARMVVEEIKIGLRVETCDGSVRGFVKSEGLKKMVKELMEGERGKEVRKKVMEVGKAAKAEDGSSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G528120`
TK1151 ID	TkA01G528120
OH-1004 ID	LXL04_011099
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	79.700
Protein coverage (%)	TK1151 100.000 / OH-1004 36.811 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G528120

Location Chr01:132554940-132555494 (+)

Description Similar to UGT90A1: UDP-glycosyltransferase 90A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16890`	UDP-glycosyltransferase 90A1.	No verified direct reference in this release
`At1g10400`	UDP-glycosyltransferase 90A2.	No verified direct reference in this release
`At4g36770`	UDP-glycosyltransferase 72C1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011099 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016134 saponin metabolic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0050004 isoflavone 7-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10400

ath:AT2G16890

gmx:100101902

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.531

Rank 1 · TkA01G528120 · TK1151

Cytoplasm0.268

Rank 2 · TkA01G528120 · TK1151

Endoplasmic reticulum0.091

Rank 3 · TkA01G528120 · TK1151

Mitochondrion0.074

Rank 4 · TkA01G528120 · TK1151

Nucleus0.065

Rank 5 · TkA01G528120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13528Glyco_trans_1_324-105 aa

PF00201UDPGT37-133 aa

PF06722EryCIII-like_C41-100 aa

PF21228RuBisCO_activase_AAA_helical51-72 aa

PF21228RuBisCO_activase_AAA_helical100-134 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G528120	`PF13528`	Glyco_trans_1_3	24	105	0.052	13.4
TkA01G528120	`PF00201`	UDPGT	37	133	1e-15	58.3
TkA01G528120	`PF06722`	EryCIII-like_C	41	100	0.024	15.3
TkA01G528120	`PF21228`	RuBisCO_activase_AAA_helical	51	72	0.014	16.4
TkA01G528120	`PF21228`	RuBisCO_activase_AAA_helical	100	134	0.014	16.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVX4`	Arabidopsis thaliana	sp\|Q9ZVX4\|U90A1_ARATH UDP-glycosyltransferase 90A1	56.300%	Swiss-Prot	High
`Q9SY84`	Arabidopsis thaliana	sp\|Q9SY84\|U90A2_ARATH UDP-glycosyltransferase 90A2	50.900%	Swiss-Prot	High
`O23205`	Arabidopsis thaliana	sp\|O23205\|U72C1_ARATH UDP-glycosyltransferase 72C1	50.900%	Swiss-Prot	High

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