TkA01G528090 | RubberDandelionOmics

Gene overview

TkA01G528090

Reference: TK1151 Chr: Chr01 Coordinates: 132545880-132549720 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

781 bp · TkA01G528090|TK1151|cDNA

GGCGTGGGTAAAGTGCAAACCCCAATTTTCTGCAAACACCACCAACGACTCCGAATCACATAGAACAATGGAGTGGGAAGCCGACGAGAAAGAGGTAAAAGCCGCCGGAGCTGAGCTTCTGCCGGACGGACGGAAAGGACTCCGCATTCATGGCTGGGAGATCGAGTCTAGCAACCGTTCAATTCTCACCTCCCTCAACCTACAATCGTGGGAAGAAAAGCTTGAAACAACCCACTTGCCAGAGATGATGTTTGGGGACA...

CDS

Download CDS FASTA

849 bp · TkA01G528090|TK1151|CDS

ATGGAGTGGGAAGCCGACGAGAAAGAGGTAAAAGCCGCCGGAGCTGAGCTTCTGCCGGACGGACGGAAAGGACTCCGCATTCATGGCTGGGAGATCGAGTCTAGCAACCGTTCAATTCTCACCTCCCTCAACCTACAATCGTGGGAAGAAAAGCTTGAAACAACCCACTTGCCAGAGATGATGTTTGGGGACAGTTCCTTGGTTCTTAAGCACATGAAAAGTGGCACAAAAATTCACTTTAATGCATACGATGCTTTACT...

Protein

Download Protein FASTA

282 aa · TkA01G528090|TK1151|PROTEIN

MEWEADEKEVKAAGAELLPDGRKGLRIHGWEIESSNRSILTSLNLQSWEEKLETTHLPEMMFGDSSLVLKHMKSGTKIHFNAYDALLGWKKDALPPVEVPAAAQWKFRSKPFEQVILDYDYTFTTPYSGSETVETGSEENKGCLKWEDCDEQINVAKLASKEPILLYDEVVLYEDELADSGVSFLTVKVRVMPSCWFLLLRFWLRVDGALMRLRDTRVFCTFNENTKPVILRDICWRESTFKALASKGYPSDSASYNDPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G528090`
TK1151 ID	TkA01G528090
OH-1004 ID	LXL04_019939
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.700
Protein coverage (%)	TK1151 67.021 / OH-1004 70.787 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G528090

Location Chr01:132545880-132549720 (+)

Description Similar to TIP41L: TIP41-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34270`	May be involved in the regulation of the TOR signaling pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019939 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009266 response to temperature stimulus Biological Process

GO:0031929 TOR signaling Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0072542 protein phosphatase activator activity Molecular Function

KEGG gene cross-reference

ath:AT4G34270

cel:CELE_ZK688.9

ddi:DDB_G0285919

xla:432068

xtr:548453

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.395

Rank 1 · TkA01G528090 · TK1151

Cytoplasm0.321

Rank 2 · TkA01G528090 · TK1151

Cell membrane0.146

Rank 3 · TkA01G528090 · TK1151

Mitochondrion0.111

Rank 4 · TkA01G528090 · TK1151

Endoplasmic reticulum0.095

Rank 5 · TkA01G528090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04176TIP4160-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G528090	`PF04176`	TIP41	60	244	5.5e-56	189.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VXY4`	Arabidopsis thaliana	sp\|Q8VXY4\|TIPRL_ARATH TIP41-like protein	65.900%	Swiss-Prot	High

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