TkA01G524640 | RubberDandelionOmics

Gene overview

TkA01G524640

Reference: TK1151 Chr: Chr01 Coordinates: 131700844-131702091 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1166 bp · TkA01G524640|TK1151|cDNA

TAAAAAACAAAATCAAAGTAGCTAATTCCAACCCCTTGTTGAATCTTGATTTATAAAAAAGTTGGAAAACCCCCTTCAATCGAATCCAGAGTGGGTGAACTGCGACGATGGGAATTTCCTGTTCAACCCAAAAAAATGAACAGCCGGCCACCACTGTCAAAAAACAGATCTTCATCTTATCCGGCCAGAGCAACATGGCCGGTCGCGGCGGAGTTAAGAACAAGAAGTGGGACGGGGTAGTTCCGGACGATTGTAAACCT...

CDS

Download CDS FASTA

750 bp · TkA01G524640|TK1151|CDS

ATGGGAATTTCCTGTTCAACCCAAAAAAATGAACAGCCGGCCACCACTGTCAAAAAACAGATCTTCATCTTATCCGGCCAGAGCAACATGGCCGGTCGCGGCGGAGTTAAGAACAAGAAGTGGGACGGGGTAGTTCCGGACGATTGTAAACCTGATCCCTCCACTATCCATCGTCTAAACGCTAGCCTAATATGGGAAACCGCCCAGGAGCCCCTCCATGCCGACATCGACACAAAGAAGACCTGCGGTGTTGGTCCTGG...

Protein

Download Protein FASTA

249 aa · TkA01G524640|TK1151|PROTEIN

MGISCSTQKNEQPATTVKKQIFILSGQSNMAGRGGVKNKKWDGVVPDDCKPDPSTIHRLNASLIWETAQEPLHADIDTKKTCGVGPGMSFANAVKDYITGVIDLVPCAVGGTAIKEWAKGKRLYEGMVKRAKYAAGSGGEIKALLWYQGESDAPEINAAESYKTNMETLIHNIRSDLGLPSLPIIQVAIASGGGHMEVIREAQKAIDLPNVVCVDAMGLEMKEDNLHLTTPAQVQLGHMLADAYLAHFG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G524640`
TK1151 ID	TkA01G524640
OH-1004 ID	LXL04_001576
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G524640

Location Chr01:131700844-131702091 (-)

Description Similar to At4g34215: Probable carbohydrate esterase At4g34215

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34215`	Probable carbohydrate esterase At4g34215.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001576 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019752 carboxylic acid metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016787 hydrolase activity Molecular Function

GO:0052689 carboxylic ester hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT4G34215

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.606

Rank 1 · TkA01G524640 · TK1151

Nucleus0.277

Rank 2 · TkA01G524640 · TK1151

Extracellular0.142

Rank 3 · TkA01G524640 · TK1151

Cell membrane0.133

Rank 4 · TkA01G524640 · TK1151

Mitochondrion0.131

Rank 5 · TkA01G524640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03629SASA18-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G524640	`PF03629`	SASA	18	245	2.1e-93	312.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L9J9`	Arabidopsis thaliana	sp\|Q8L9J9\|CAES_ARATH Probable carbohydrate esterase At4g34215	61.600%	Swiss-Prot	High

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