TkA01G520820 | RubberDandelionOmics

Gene overview

TkA01G520820

Reference: TK1151 Chr: Chr01 Coordinates: 130608158-130610104 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · TkA01G520820|TK1151|cDNA

CACACACCTACCTAGCCTGACTTTTTCTCTGTGGTAGGTCCCACCTCGAATTTCCCATATTTTCTACTCCCACGAGATTCATTCATGGCATGTTATCTTCTAGATGGCTTTTGCTTACAAAAATATATATAGTCTACTAGTCTGATGAAATGCAAGTGAAAATCATAATTCATCGCTATCTCCTTGCATATTCAACATGGAATCCTCCACCAACGAGATCATCAAAGAAATCCCTGGTATGATTCAGATTTTCAAAGACG...

CDS

Download CDS FASTA

1014 bp · TkA01G520820|TK1151|CDS

ATGGAATCCTCCACCAACGAGATCATCAAAGAAATCCCTGGTATGATTCAGATTTTCAAAGACGGTCGAATCCATAAATTTCACGTTCCCAATATTGTTCCCGCCGGCATCGATCCTTCCTCCGGCGTCAATTCCAAAGACGTCGTTCTTTCACCACAAACCAACATCTCTGCTAGGCTTTATGTTCCAAAAATCCCACCCACCCACCAAAAACTCCCGCTTCTAATCTTCTATCACGGCGGTGGATTCGTGATCGAATC...

Protein

Download Protein FASTA

337 aa · TkA01G520820|TK1151|PROTEIN

MESSTNEIIKEIPGMIQIFKDGRIHKFHVPNIVPAGIDPSSGVNSKDVVLSPQTNISARLYVPKIPPTHQKLPLLIFYHGGGFVIESGKSSMYHDFLNHVVSESNVVAVSVDYRLAPEFPLPIAYEDSWEAIKWVGEHVNGNGPEPWLNEYADLQNIFLAGDSAGGNIAHHMAIRVGSDTPAGLRFHGAILLHPYFWGKERVGDESDWIKPETVVFVDDIWALVHPGSSGADDPLINPDMDERIAGMGCSKMLVCIGGND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G520820`
TK1151 ID	TkA01G520820
OH-1004 ID	LXL04_038381
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	56.900
Protein coverage (%)	TK1151 85.163 / OH-1004 89.423 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G520820

Location Chr01:130608158-130610104 (+)

Description Similar to CXE2: Probable carboxylesterase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48690`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At1g49650`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At1g19190`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At2g03550`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At3g48700`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038381 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009717 isoflavonoid biosynthetic process Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0046287 isoflavonoid metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016787 hydrolase activity Molecular Function

GO:0033987 2-hydroxyisoflavanone dehydratase activity Molecular Function

GO:0106435 carboxylesterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G47480

ath:AT2G03550

ath:AT3G48690

ath:AT3G48700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.823

Rank 1 · TkA01G520820 · TK1151

Nucleus0.371

Rank 2 · TkA01G520820 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA01G520820 · TK1151

Cell membrane0.036

Rank 4 · TkA01G520820 · TK1151

Plastid0.035

Rank 5 · TkA01G520820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10340Say1_Mug18056-169 aa

PF00135COesterase61-191 aa

PF07224Chlorophyllase65-189 aa

PF20434BD-FAE68-175 aa

PF12146Hydrolase_471-102 aa

PF07859Abhydrolase_375-287 aa

PF19969VMAP-M8113-140 aa

PF12146Hydrolase_4155-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G520820	`PF10340`	Say1_Mug180	56	169	9.8e-05	22.1
TkA01G520820	`PF00135`	COesterase	61	191	2.1e-09	37.6
TkA01G520820	`PF07224`	Chlorophyllase	65	189	3.9e-05	23.3
TkA01G520820	`PF20434`	BD-FAE	68	175	9.3e-12	45.6
TkA01G520820	`PF12146`	Hydrolase_4	71	102	0.013	15.6
TkA01G520820	`PF07859`	Abhydrolase_3	75	287	2.2e-46	159.0
TkA01G520820	`PF19969`	VMAP-M8	113	140	0.42	11.9
TkA01G520820	`PF12146`	Hydrolase_4	155	205	0.013	15.6
TkA01G520820	`PF03765`	CRAL_TRIO_N	261	273	0.33	11.9
TkA01G520820	`PF19969`	VMAP-M8	297	317	0.42	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SMN0`	Arabidopsis thaliana	sp\|Q9SMN0\|CXE12_ARATH Probable carboxylesterase 12	45.700%	Swiss-Prot	Medium
`Q9FX93`	Arabidopsis thaliana	sp\|Q9FX93\|CXE4_ARATH Probable carboxylesterase 4, mitochondrial	46.000%	Swiss-Prot	Medium
`Q9LMA7`	Arabidopsis thaliana	sp\|Q9LMA7\|CXE1_ARATH Probable carboxylesterase 1	42.900%	Swiss-Prot	Medium
`Q9ZQ91`	Arabidopsis thaliana	sp\|Q9ZQ91\|CXE7_ARATH Probable carboxylesterase 7	43.200%	Swiss-Prot	Medium
`Q9SMM9`	Arabidopsis thaliana	sp\|Q9SMM9\|CXE13_ARATH Probable carboxylesterase 13	43.400%	Swiss-Prot	Medium

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