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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G520790
Reference: TK1151 Chr: Chr01 Coordinates: 130592481-130595342 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1791 bp · TkA01G520790|TK1151|cDNA

AAGGGTGAGGAGTGTAAGTTTTACTTCAATATTCCTTTTTAATCTTCGTAAGCCGTCTTTCACATCTCTTTCGCTTCATCCTCCTCCCTCTCACAAGGAACTCTGGTTCATCTCTCCGGGCAGGCCCTCCGTCCTTCTCCTCTCTCTACACCGTCATACGCCGTTGCAGTGTTTCAGGTACGAGAGAAGAAGATAACAGAGGAGAGGAGAGGAGTTATTCACCGGCAAGGATTTCAATATGCAGCCAACCAATGGCAGCG...

CDS

Download CDS FASTA

1341 bp · TkA01G520790|TK1151|CDS

ATGCAGCCAACCAATGGCAGCGGCGGTGATTTGACTCAGCAACAACAGCAGCAGCAACAACAGTGGTTAGCTATGCAGCAGTACCAGCAACAACAATGGTTAGCGATGCAGCAGTACCCCGGGGCGGCGGCTGCGTCAATGGCGATGCATCATCCAGCGATGATGTACCAACAACCACCGCCACACTATATGCCTTACCATTATCAGCAGCAGCAGTACCAGCAGCAATCGCAACAGCCGCAAAAAGGTAACCAGATTCA...

Protein

Download Protein FASTA

446 aa · TkA01G520790|TK1151|PROTEIN

MQPTNGSGGDLTQQQQQQQQQWLAMQQYQQQQWLAMQQYPGAAAASMAMHHPAMMYQQPPPHYMPYHYQQQQYQQQSQQPQKGNQIQTSSEDNKTIWIGDLQHWMDETYLQSCFAQTGEVASIKLIRNKQTGQSERYGFIEFMSHESADKVLQSYNGTTMPNTDQAFRLNWASFSSGEKRQEPGSDLSIFIGDLAPDVTDTILYETFSGRYPSVKGAKVVVDTNTGCSKGYGFVRFSDENERTRAMNEMNGQYCSSRPMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G520790
TK1151 IDTkA01G520790
OH-1004 IDLXL04_001636
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G520790
LocationChr01:130592481-130595342 (-)
DescriptionSimilar to RBP47: Polyadenylate-binding protein RBP47
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19130 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At1g49600 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At1g47500 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release
At1g47490 Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001636 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0034063 stress granule assembly Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008143 poly(A) binding Molecular Function
KEGG gene cross-reference
ath:AT1G47490
ath:AT1G49600
ath:AT3G19130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.761
Rank 1 · TkA01G520790 · TK1151
Cytoplasm0.458
Rank 2 · TkA01G520790 · TK1151
Cell membrane0.032
Rank 3 · TkA01G520790 · TK1151
Endoplasmic reticulum0.019
Rank 4 · TkA01G520790 · TK1151
Lysosome / Vacuole0.019
Rank 5 · TkA01G520790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05172RRM_Nup3526-54 aa
PF22976RRM_1037-58 aa
PF00076RRM_196-163 aa
PF16367RRM_796-154 aa
PF22976RRM_10105-167 aa
PF08777RRM_3109-169 aa
PF13893RRM_5110-159 aa
PF05172RRM_Nup35113-160 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G520790PF05172RRM_Nup3526540.0002821.5
TkA01G520790PF22976RRM_1037584.6e-0524.2
TkA01G520790PF00076RRM_1961632.7e-54181.6
TkA01G520790PF16367RRM_7961547.5e-0729.8
TkA01G520790PF22976RRM_101051674.6e-0524.2
TkA01G520790PF08777RRM_31091695.4e-0627.1
TkA01G520790PF13893RRM_51101593.2e-0524.3
TkA01G520790PF05172RRM_Nup351131600.0002821.5
TkA01G520790PF07576BRAP21141620.1712.8
TkA01G520790PF28442DUF84001201590.0116.8
TkA01G520790PF14605Nup35_RRM_21261500.005517.3
TkA01G520790PF28976RRM_ACIN11381640.0315.1
TkA01G520790PF29326RRM_MUD2_C1391580.003917.9
TkA01G520790PF16842RRM_occluded1391590.01316.1
TkA01G520790PF11767SET_assoc1391600.03114.6
TkA01G520790PF00076RRM_11892592.7e-54181.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WW84Arabidopsis thalianasp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B65.800%Swiss-ProtMedium
F4I3B3Arabidopsis thalianasp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A63.900%Swiss-ProtHigh
Q9SX80Arabidopsis thalianasp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C'63.500%Swiss-ProtMedium
Q9SX79Arabidopsis thalianasp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C62.600%Swiss-ProtMedium

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