TkA01G510280 | RubberDandelionOmics

Gene overview

TkA01G510280

Reference: TK1151 Chr: Chr01 Coordinates: 127853745-127855201 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1075 bp · TkA01G510280|TK1151|cDNA

TCTTCATCCACTGGATTTGGGATTTCCGTTTTTGTTTCTCGCCCTGGATTCAAAGCCGGAATTTACAATAATATCAGCAATCGAAGCATTTTCATTTCTTCTTCCAAGGTACTATTAGTAATATTCAATTCTTTGTATGGAATTATTTAACAAACGGTTGTGGGAAGCAGCCGAAGGAATTAGAGTATGATGCCAGGGAGAAATTATGGGAAAAGTTTGGATTATGTTCCGCTAAGTGCTATGTACCAGTTGTTTTTTAT...

CDS

Download CDS FASTA

351 bp · TkA01G510280|TK1151|CDS

ATGGGACTCCTCAGCATCATTCGGAAGATCAAACGGAAAGAAAAAGAAATGCGTATTCTTATGGTGGGACTTGACAATTCTGGGAAGACAACAATAGTGTTGAAAATCAATGGTGAATATACCAGTGTCATCAGCCCTACTCTTGGCTTCAACATCAAAACCATGACCTATGATAAGTATACCCTAAACATATGGGATGTTGGAGGTCAAAAGACTATACGGTCTTACTGGAGAAACTACTTTGAGCAAACAGATGGATT...

Protein

Download Protein FASTA

116 aa · TkA01G510280|TK1151|PROTEIN

MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEYTSVISPTLGFNIKTMTYDKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLIRLDDCKYELDNLLKEERLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G510280`
TK1151 ID	TkA01G510280
OH-1004 ID	LXL04_034453
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.414 / OH-1004 91.870 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G510280

Location Chr01:127853745-127855201 (-)

Description Similar to ARL2: ADP-ribosylation factor-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g18390`	Has a role in the cofactor-dependent pathway of microtubule biogenesis.	The TITAN5 gene of Arabidopsis encodes a protein related to the ADP ribosylation factor family of GTP binding proteins.2000 · DOI: 10.1105/tpc.12.8.1379

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034453 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000132 establishment of mitotic spindle orientation Biological Process

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0006110 regulation of glycolytic process Biological Process

GO:0006457 protein folding Biological Process

GO:0007021 tubulin complex assembly Biological Process

GO:0007098 centrosome cycle Biological Process

GO:0009558 embryo sac cellularization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009960 endosperm development Biological Process

GO:0010811 positive regulation of cell-substrate adhesion Biological Process

GO:0015870 acetylcholine transport Biological Process

GO:0031113 regulation of microtubule polymerization Biological Process

KEGG gene cross-reference

ath:AT2G18390

bta:511349

dme:Dmel_CG7435

hsa:402

mmu:56327

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.449

Rank 1 · TkA01G510280 · TK1151

Golgi apparatus0.262

Rank 2 · TkA01G510280 · TK1151

Lysosome / Vacuole0.222

Rank 3 · TkA01G510280 · TK1151

Cell membrane0.184

Rank 4 · TkA01G510280 · TK1151

Nucleus0.149

Rank 5 · TkA01G510280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf4-115 aa

PF29668BilD_C9-83 aa

PF00503G-alpha11-37 aa

PF015916PF2K12-52 aa

PF09439SRPRB15-94 aa

PF26860Phage_T5_RBP516-72 aa

PF08477Roc18-97 aa

PF00071Ras18-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G510280	`PF00025`	Arf	4	115	1.1e-45	155.9
TkA01G510280	`PF29668`	BilD_C	9	83	0.1	12.8
TkA01G510280	`PF00503`	G-alpha	11	37	1.2e-11	45.1
TkA01G510280	`PF01591`	6PF2K	12	52	0.03	14.4
TkA01G510280	`PF09439`	SRPRB	15	94	7.4e-06	26.2
TkA01G510280	`PF26860`	Phage_T5_RBP5	16	72	0.11	12.0
TkA01G510280	`PF08477`	Roc	18	97	2.1e-11	44.8
TkA01G510280	`PF00071`	Ras	18	95	5.7e-08	33.2
TkA01G510280	`PF04670`	Gtr1_RagA	18	95	1.8e-06	28.3
TkA01G510280	`PF01926`	MMR_HSR1	18	110	1.1e-05	26.2
TkA01G510280	`PF02421`	FeoB_N	18	76	0.0064	16.7
TkA01G510280	`PF00503`	G-alpha	45	95	1.2e-11	45.1
TkA01G510280	`PF22155`	Mre11_acc_DNA_cap	53	114	0.0062	17.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPX1`	Arabidopsis thaliana	sp\|Q9ZPX1\|ARF5_ARATH ADP-ribosylation factor-like protein 2	93.100%	Swiss-Prot	High

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