TkA01G510090 | RubberDandelionOmics

Gene overview

TkA01G510090

Reference: TK1151 Chr: Chr01 Coordinates: 127807048-127807727 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

405 bp · TkA01G510090|TK1151|cDNA

ATGATTGAGAAGGATGCTCTATTTCTATCTCAAAATCATTTTTTGCATAATAATTTTGTCCAATTTCAGAAAGCATCCGTGAGTGAGAGAGATGCCCAATTGCGAGCTGAAATCAAGCAACTGTTGAAGGAGACGTCCACTTTATCAGAGCCTTCAACATTTGCTCAATCTGCAAAGCTTAGAAGACTGGCAGTAGCTAAGGAGAAAGAGCTTGCAAAAAGTCAAGAGTCGGCCAGTAAGGAGATAAAAACATCATTCAG...

CDS

Download CDS FASTA

405 bp · TkA01G510090|TK1151|CDS

ATGATTGAGAAGGATGCTCTATTTCTATCTCAAAATCATTTTTTGCATAATAATTTTGTCCAATTTCAGAAAGCATCCGTGAGTGAGAGAGATGCCCAATTGCGAGCTGAAATCAAGCAACTGTTGAAGGAGACGTCCACTTTATCAGAGCCTTCAACATTTGCTCAATCTGCAAAGCTTAGAAGACTGGCAGTAGCTAAGGAGAAAGAGCTTGCAAAAAGTCAAGAGTCGGCCAGTAAGGAGATAAAAACATCATTCAG...

Protein

Download Protein FASTA

134 aa · TkA01G510090|TK1151|PROTEIN

MIEKDALFLSQNHFLHNNFVQFQKASVSERDAQLRAEIKQLLKETSTLSEPSTFAQSAKLRRLAVAKEKELAKSQESASKEIKTSFSMYEKILMISKIVIYLTMIVCFWRIHVAAISKELVQPFGNPFSFFPLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G510090`
TK1151 ID	TkA01G510090
OH-1004 ID	LXL04_001789
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 19.007 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G510090

Location Chr01:127807048-127807727 (-)

Description Similar to Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16444`	Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001789 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0046256 2,4,6-trinitrotoluene catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004364 glutathione transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G17180

nta:107782951

nta:107823949

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.577

Rank 1 · TkA01G510090 · TK1151

Nucleus0.099

Rank 2 · TkA01G510090 · TK1151

Cytoplasm0.079

Rank 3 · TkA01G510090 · TK1151

Mitochondrion0.077

Rank 4 · TkA01G510090 · TK1151

Peroxisome0.072

Rank 5 · TkA01G510090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23169HalD5-77 aa

PF04420CHD513-124 aa

PF10015ThermoDBP-RP_arch32-32 aa

PF10015ThermoDBP-RP_arch58-93 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G510090	`PF23169`	HalD	5	77	0.098	12.8
TkA01G510090	`PF04420`	CHD5	13	124	7.5e-08	33.1
TkA01G510090	`PF10015`	ThermoDBP-RP_arch	32	32	0.16	12.9
TkA01G510090	`PF10015`	ThermoDBP-RP_arch	58	93	0.16	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1H5D2`	Arabidopsis thaliana	sp\|Q1H5D2\|GET1_ARATH Protein GET1	31.800%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card