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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G504100
Reference: TK1151 Chr: Chr01 Coordinates: 126214949-126215395 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

447 bp · TkA01G504100|TK1151|cDNA

ATGAACAAAAACGGAATCAAACCGAATGATGTAACCCTGATGTCTGTTCTATCCGCTTGTAACCACAGTGGTTTAGTGCAAGATGGGAAGACATGGTTCAGTAGAATGAAACAACTTGGAATTAGTCCAAGAATCGAGCATTATGGAATCATGATTGATCTTTTGGGGAGAGCAGGGTGTTTGGAAGAAGCCGAGAATGTCATGGATGAAATGCCGTTTGAGGTTAACGAGATTATACTGAGTTCGTTTTTGTCCGCGTG...

CDS

Download CDS FASTA

447 bp · TkA01G504100|TK1151|CDS

ATGAACAAAAACGGAATCAAACCGAATGATGTAACCCTGATGTCTGTTCTATCCGCTTGTAACCACAGTGGTTTAGTGCAAGATGGGAAGACATGGTTCAGTAGAATGAAACAACTTGGAATTAGTCCAAGAATCGAGCATTATGGAATCATGATTGATCTTTTGGGGAGAGCAGGGTGTTTGGAAGAAGCCGAGAATGTCATGGATGAAATGCCGTTTGAGGTTAACGAGATTATACTGAGTTCGTTTTTGTCCGCGTG...

Protein

Download Protein FASTA

148 aa · TkA01G504100|TK1151|PROTEIN

MNKNGIKPNDVTLMSVLSACNHSGLVQDGKTWFSRMKQLGISPRIEHYGIMIDLLGRAGCLEEAENVMDEMPFEVNEIILSSFLSACGYVKDTVRAQRILRKTHGKEFWNDGNYITMRNLYAIEKRWGDVEEVKEMMRSKRVGKKSWV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G504100
TK1151 IDTkA01G504100
OH-1004 IDLXL04_001847
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 95.270 / OH-1004 23.115
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G504100
LocationChr01:126214949-126215395 (-)
DescriptionSimilar to PCMP-E9: Pentatricopeptide repeat-containing protein At2g44880
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g44880 Pentatricopeptide repeat-containing protein At2g44880. No verified direct reference in this release
At5g43790 Pentatricopeptide repeat-containing protein At5g43790. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001847 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT2G29760
ath:AT2G44880
ath:AT2G45350
ath:AT3G29230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.657
Rank 1 · TkA01G504100 · TK1151
Plastid0.127
Rank 2 · TkA01G504100 · TK1151
Nucleus0.091
Rank 3 · TkA01G504100 · TK1151
Cytoplasm0.031
Rank 4 · TkA01G504100 · TK1151
Cell membrane0.005
Rank 5 · TkA01G504100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_31-56 aa
PF13041PPR_21-20 aa
PF26713TPR_RPO41_N1-39 aa
PF17177PPR_long1-88 aa
PF12854PPR_14-18 aa
PF01535PPR11-41 aa
PF13041PPR_211-43 aa
PF12854PPR_140-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G504100PF13812PPR_31567.8e-0833.0
TkA01G504100PF13041PPR_21201.4e-0732.2
TkA01G504100PF26713TPR_RPO41_N1390.005117.1
TkA01G504100PF17177PPR_long1880.01115.9
TkA01G504100PF12854PPR_14182.8e-0627.7
TkA01G504100PF01535PPR11411.1e-1248.0
TkA01G504100PF13041PPR_211431.4e-0732.2
TkA01G504100PF12854PPR_140712.8e-0627.7
TkA01G504100PF01535PPR47711.1e-1248.0
TkA01G504100PF13041PPR_247711.4e-0732.2
TkA01G504100PF13812PPR_3721027.8e-0833.0
TkA01G504100PF26713TPR_RPO41_N721210.005117.1
TkA01G504100PF01535PPR811011.1e-1248.0
TkA01G504100PF20431E_motif1091452e-0731.8
TkA01G504100PF13812PPR_31141427.8e-0833.0
TkA01G504100PF13041PPR_21191411.4e-0732.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q1PEU4Arabidopsis thalianasp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g4488055.800%Swiss-ProtHigh
Q9FG85Arabidopsis thalianasp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g4379044.000%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275043.400%Swiss-ProtMedium
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151042.500%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631045.300%Swiss-ProtMedium

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