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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G502510
Reference: TK1151 Chr: Chr01 Coordinates: 125867434-125867817 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

384 bp · TkA01G502510|TK1151|cDNA

ATGGACTCTATTTCTATGATTGACCCAATGAGGCACCCAGTTTTATTTGCTTCTTTACATCAACCTTCTAATTCCATACCCGACTTCAACCTTCTTAGTGGTCATAACAATGGTGGTCTACTCTCAACATTACTGCCAACCTCTTATATACCTCAATTTGATCAAAGCCAACTCATCACTTCCATAGGCACGAATTTCGAAAGAGGGGTCCCATCAATCCAATCATCCTTTCAAGCACCGACACCAGCTTCTTGTTTGAT...

CDS

Download CDS FASTA

384 bp · TkA01G502510|TK1151|CDS

ATGGACTCTATTTCTATGATTGACCCAATGAGGCACCCAGTTTTATTTGCTTCTTTACATCAACCTTCTAATTCCATACCCGACTTCAACCTTCTTAGTGGTCATAACAATGGTGGTCTACTCTCAACATTACTGCCAACCTCTTATATACCTCAATTTGATCAAAGCCAACTCATCACTTCCATAGGCACGAATTTCGAAAGAGGGGTCCCATCAATCCAATCATCCTTTCAAGCACCGACACCAGCTTCTTGTTTGAT...

Protein

Download Protein FASTA

127 aa · TkA01G502510|TK1151|PROTEIN

MDSISMIDPMRHPVLFASLHQPSNSIPDFNLLSGHNNGGLLSTLLPTSYIPQFDQSQLITSIGTNFERGVPSIQSSFQAPTPASCLMNNQLIFPSNVLEDYSVMAPELLSKRNNGFWKMFSENLKLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G502510
TK1151 IDTkA01G502510
OH-1004 IDLXL04_038186
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)33.800
Protein coverage (%)TK1151 90.551 / OH-1004 27.686
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G502510
LocationChr01:125867434-125867817 (-)
DescriptionSimilar to MYB101: Transcription factor MYB101
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038186 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0009555 pollen development Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009739 response to gibberellin Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0030154 cell differentiation Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
KEGG gene cross-reference
ath:AT2G32460
ath:AT4G26930
ath:AT5G06100
dosa:Os01g0812000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.902
Rank 1 · TkA01G502510 · TK1151
Cytoplasm0.227
Rank 2 · TkA01G502510 · TK1151
Cell membrane0.020
Rank 3 · TkA01G502510 · TK1151
Mitochondrion0.016
Rank 4 · TkA01G502510 · TK1151
Endoplasmic reticulum0.015
Rank 5 · TkA01G502510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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