TkA01G502260 | RubberDandelionOmics

Gene overview

TkA01G502260

Reference: TK1151 Chr: Chr01 Coordinates: 125807583-125809628 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1033 bp · TkA01G502260|TK1151|cDNA

TGAAAGGGCAATAGCGATATTTGGAATTTTGGATCCAGCGGGAGGGTTACATACGTCTTTAAAGAAACTGGGAAGGGATAAAACGTTCTGATTTTTAAGATATCTTCTACGCAATCACACAGCTCCATAGTTGATTATCGAGAAAAAGATGGCCACTTCCGTCGCTGCTTCCTTTCAGATCAGATTCAATTCCAGCAGTATAAAATCACACGAGCAATATCCTTTAACCCCAAACCCTAAAGGATGGAAATCTTCACAAT...

CDS

Download CDS FASTA

669 bp · TkA01G502260|TK1151|CDS

ATGGCCACTTCCGTCGCTGCTTCCTTTCAGATCAGATTCAATTCCAGCAGTATAAAATCACACGAGCAATATCCTTTAACCCCAAACCCTAAAGGATGGAAATCTTCACAATCAACCGAGAATTACAAGTTGCACAGATCCATACACAGATCATTGAGGAGTCCCGTGGTTGCCCCAATGGCTATTGGAGCCAATACAAGTCAAGATACAGATGACATGTACGATGACTTGTTTAAGAAATACGGGAAAGTTGTTTACAA...

Protein

Download Protein FASTA

222 aa · TkA01G502260|TK1151|PROTEIN

MATSVAASFQIRFNSSSIKSHEQYPLTPNPKGWKSSQSTENYKLHRSIHRSLRSPVVAPMAIGANTSQDTDDMYDDLFKKYGKVVYKKNDQKSPIADVDDDAECLAFAVAMAKLASDVKAADIKLLFVKPLVYWTKFFLITTAFSRPQIDAIRNRINDLAEKQHGIFATGDTKANSWTLLDFGDIVVHIFLPEQRELYNLEEFYANATPIDLPFENQQRTDR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G502260`
TK1151 ID	TkA01G502260
OH-1004 ID	LXL04_001881
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G502260

Location Chr01:125807583-125809628 (-)

Description Similar to IJ: Protein Iojap, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12930`	May be a ribosome silencing factor (Potential).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001881 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0017148 negative regulation of translation Biological Process

GO:0042256 cytosolic ribosome assembly Biological Process

GO:0090071 negative regulation of ribosome biogenesis Biological Process

GO:0000427 plastid-encoded plastid RNA polymerase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0042644 chloroplast nucleoid Cellular Component

GO:0043023 ribosomal large subunit binding Molecular Function

KEGG gene cross-reference

ath:AT3G12930

bha:BH1328

spn:SP_1744

syn:slr1886

zma:542470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.971

Rank 1 · TkA01G502260 · TK1151

Mitochondrion0.032

Rank 2 · TkA01G502260 · TK1151

Nucleus0.030

Rank 3 · TkA01G502260 · TK1151

Cytoplasm0.019

Rank 4 · TkA01G502260 · TK1151

Peroxisome0.009

Rank 5 · TkA01G502260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02410RsfS108-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G502260	`PF02410`	RsfS	108	218	6.4e-28	97.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDY9`	Arabidopsis thaliana	sp\|Q9LDY9\|IOJAP_ARATH Protein Iojap, chloroplastic	69.900%	Swiss-Prot	High

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