TkA01G500540 | RubberDandelionOmics

Gene overview

TkA01G500540

Reference: TK1151 Chr: Chr01 Coordinates: 125392718-125393413 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

608 bp · TkA01G500540|TK1151|cDNA

TTTTTACAGGTTGTAAATGTGGGCAGGCATTATTTGAGTGATAATTACCAGCTTTCATTTAGGCTTTTCAAAGCTTCACTTTTCCTAGCGGTTATAGCGACCATAATCACTCTTTCCTACATCTGTCAACTATCGTTAAAAGATTTGATCGTTTGTTGTTTCGCGTTTCTACCCACTGGATGGGGACTCATACTTGTTGCGCAAGCATTGAGGCCATTGATTCAGGGTACGGTTTTGTGGAAGTTCACACGGGTTTTTGC...

CDS

Download CDS FASTA

426 bp · TkA01G500540|TK1151|CDS

TTTTTACAGGTTGTAAATGTGGGCAGGCATTATTTGAGTGATAATTACCAGCTTTCATTTAGGCTTTTCAAAGCTTCACTTTTCCTAGCGGTTATAGCGACCATAATCACTCTTTCCTACATCTGTCAACTATCGTTAAAAGATTTGATCGTTTGTTGTTTCGCGTTTCTACCCACTGGATGGGGACTCATACTTGTTGCGCAAGCATTGAGGCCATTGATTCAGGGTACGGTTTTGTGGAAGTTCACACGGGTTTTTGC...

Protein

Download Protein FASTA

141 aa · TkA01G500540|TK1151|PROTEIN

FLQVVNVGRHYLSDNYQLSFRLFKASLFLAVIATIITLSYICQLSLKDLIVCCFAFLPTGWGLILVAQALRPLIQGTVLWKFTRVFAQAYDFGMGIVLFTPIACLAWLPIISAFQTRFLFNRAFSRRLQIQPILKAKKKHT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G500540`
TK1151 ID	TkA01G500540
OH-1004 ID	LXL04_001892
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 99.291 / OH-1004 9.504 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G500540

Location Chr01:125392718-125393413 (-)

Description Similar to CALS8: Putative callose synthase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14570`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At1g05570`	Involved in callose synthesis at the forming cell plate during cytokinesis.	An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation.2003 · DOI: 10.1105/tpc.016097
`At5g13000`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At2g31960`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At1g06490`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001892 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006075 (1->3)-beta-D-glucan biosynthetic process Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0010233 phloem transport Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080165 callose deposition in phloem sieve plate Biological Process

GO:0000148 1,3-beta-D-glucan synthase complex Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003843 1,3-beta-D-glucan synthase activity Molecular Function

GO:0046527 glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05570

ath:AT1G06490

ath:AT2G31960

ath:AT3G14570

ath:AT5G13000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.388

Rank 1 · TkA01G500540 · TK1151

Mitochondrion0.163

Rank 2 · TkA01G500540 · TK1151

Golgi apparatus0.157

Rank 3 · TkA01G500540 · TK1151

Cytoplasm0.126

Rank 4 · TkA01G500540 · TK1151

Nucleus0.119

Rank 5 · TkA01G500540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF132392TM25-71 aa

PF132392TM110-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G500540	`PF13239`	2TM	25	71	2.8	8.8
TkA01G500540	`PF13239`	2TM	110	127	2.8	8.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LUD7`	Arabidopsis thaliana	sp\|Q9LUD7\|CALS8_ARATH Putative callose synthase 8	64.700%	Swiss-Prot	High
`Q9AUE0`	Arabidopsis thaliana	sp\|Q9AUE0\|CALS1_ARATH Callose synthase 1	49.600%	Swiss-Prot	Medium
`Q9LXT9`	Arabidopsis thaliana	sp\|Q9LXT9\|CALS3_ARATH Callose synthase 3	48.100%	Swiss-Prot	Medium
`Q9SL03`	Arabidopsis thaliana	sp\|Q9SL03\|CALS2_ARATH Callose synthase 2	48.900%	Swiss-Prot	Medium
`Q9SHJ3`	Arabidopsis thaliana	sp\|Q9SHJ3\|CALS7_ARATH Callose synthase 7	46.000%	Swiss-Prot	Medium

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