TkA01G490190 | RubberDandelionOmics

Gene overview

TkA01G490190

Reference: TK1151 Chr: Chr01 Coordinates: 122672269-122673644 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

800 bp · TkA01G490190|TK1151|cDNA

CCGTGGACGGTTCTTTTTATCTGTTTCGATCTCTGCGGCTGTGGTTGGATCATAGGACGATTAGGTTTTTTTTTTTTCTTTCTGATTTCCAATTCAACAATGGAAGAGATAACAGAGGGAGTAAACAACATAAACATGTCCGCCGATTCTTACAAGAAAAACCGAATTCAAGTCTCGAACACCAAGAAGCCGCTATTCTTCTACGTCAATCTTGCCAAGAGGTATATGCAGCAGCACAATGAGGTGGAACTTTCAGCGCT...

CDS

Download CDS FASTA

492 bp · TkA01G490190|TK1151|CDS

CCGTGGACGGTTCTTTTTATCTGTTTCGATCTCTGCGGCTGTGGTTGGATCATAGGACGATTAGGTTTTTTTTTTTTCTTTCTGATTTCCAATTCAACAATGGAAGAGATAACAGAGGGAGTAAACAACATAAACATGTCCGCCGATTCTTACAAGAAAAACCGAATTCAAGTCTCGAACACCAAGAAGCCGCTATTCTTCTACGTCAATCTTGCCAAGAGGTATATGCAGCAGCACAATGAGGTGGAACTTTCAGCGCT...

Protein

Download Protein FASTA

163 aa · TkA01G490190|TK1151|PROTEIN

PWTVLFICFDLCGCGWIIGRLGFFFFFLISNSTMEEITEGVNNINMSADSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGFAVEKKIMTSTVDMKGESRGRPVQKAKIEIVLGKTANFDELMAAAQEERELGYAEEQN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G490190`
TK1151 ID	TkA01G490190
OH-1004 ID	LXL04_002017
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.400
Protein coverage (%)	TK1151 98.773 / OH-1004 79.703 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G490190

Location Chr01:122672269-122673644 (+)

Description Similar to At2g34160: Uncharacterized protein At2g34160

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34160`	Uncharacterized protein At2g34160.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002017 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006364 rRNA processing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G34160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · TkA01G490190 · TK1151

Nucleus0.434

Rank 2 · TkA01G490190 · TK1151

Endoplasmic reticulum0.106

Rank 3 · TkA01G490190 · TK1151

Mitochondrion0.070

Rank 4 · TkA01G490190 · TK1151

Cell membrane0.069

Rank 5 · TkA01G490190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22642MinC_N_126-85 aa

PF23469KH_1231-103 aa

PF20989Sarcoglycan_2_C32-70 aa

PF01918Alba54-112 aa

PF08130Antimicrobial1862-103 aa

PF12328Rpp2072-119 aa

PF02566OsmC82-150 aa

PF20989Sarcoglycan_2_C92-155 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G490190	`PF22642`	MinC_N_1	26	85	0.15	13.1
TkA01G490190	`PF23469`	KH_12	31	103	0.097	13.6
TkA01G490190	`PF20989`	Sarcoglycan_2_C	32	70	0.089	13.6
TkA01G490190	`PF01918`	Alba	54	112	5.4e-13	49.2
TkA01G490190	`PF08130`	Antimicrobial18	62	103	0.18	12.7
TkA01G490190	`PF12328`	Rpp20	72	119	0.0039	17.8
TkA01G490190	`PF02566`	OsmC	82	150	0.25	12.5
TkA01G490190	`PF20989`	Sarcoglycan_2_C	92	155	0.089	13.6
TkA01G490190	`PF22642`	MinC_N_1	130	148	0.15	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22969`	Arabidopsis thaliana	sp\|O22969\|Y2416_ARATH Uncharacterized protein At2g34160	80.800%	Swiss-Prot	High

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