TkA01G489040 | RubberDandelionOmics

Gene overview

TkA01G489040

Reference: TK1151 Chr: Chr01 Coordinates: 122378818-122379251 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

354 bp · TkA01G489040|TK1151|cDNA

AGGAACCCTAGATCTAATGGATACATCAATGGCTATGGAGTCTCCTCTGCAGGTTTGACGTTCATCATTTCAAAGCTTCCGTTGGAGTATTTGAAGGATTACGCGACAGAGTTTGCAATCGGCGAGTTGGTTCGATTTGACACTGAGGTGAGTTGGATTTGGCAAACGGAAAATGGGAAGTGGGAAGTGAGATCGATTCATAAAATCGAAGATGAAGAACACAGCGAAGAAACTTTTGACGTCGTCGTTGTTTGTATACC...

CDS

Download CDS FASTA

354 bp · TkA01G489040|TK1151|CDS

AGGAACCCTAGATCTAATGGATACATCAATGGCTATGGAGTCTCCTCTGCAGGTTTGACGTTCATCATTTCAAAGCTTCCGTTGGAGTATTTGAAGGATTACGCGACAGAGTTTGCAATCGGCGAGTTGGTTCGATTTGACACTGAGGTGAGTTGGATTTGGCAAACGGAAAATGGGAAGTGGGAAGTGAGATCGATTCATAAAATCGAAGATGAAGAACACAGCGAAGAAACTTTTGACGTCGTCGTTGTTTGTATACC...

Protein

Download Protein FASTA

117 aa · TkA01G489040|TK1151|PROTEIN

RNPRSNGYINGYGVSSAGLTFIISKLPLEYLKDYATEFAIGELVRFDTEVSWIWQTENGKWEVRSIHKIEDEEHSEETFDVVVVCIPDIIQIPESHIFQVVVIIGSSASAHHPSRNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G489040`
TK1151 ID	TkA01G489040
OH-1004 ID	LXL04_005483
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	54.900
Protein coverage (%)	TK1151 76.923 / OH-1004 26.638 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G489040

Location Chr01:122378818-122379251 (-)

Description Similar to At1g62620: Flavin-containing monooxygenase FMO GS-OX-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62600`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g65860`	Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g62620`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g62570`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g63370`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005483 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0004499 N,N-dimethylaniline monooxygenase activity Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

GO:0050661 NADP binding Molecular Function

GO:0080102 3-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function

GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G12200

ath:AT1G62560

ath:AT1G62600

ath:AT1G62620

ath:AT1G63370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · TkA01G489040 · TK1151

Nucleus0.338

Rank 2 · TkA01G489040 · TK1151

Extracellular0.065

Rank 3 · TkA01G489040 · TK1151

Mitochondrion0.044

Rank 4 · TkA01G489040 · TK1151

Peroxisome0.042

Rank 5 · TkA01G489040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00743FMO-like26-87 aa

PF20922Anamorsin_N56-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G489040	`PF00743`	FMO-like	26	87	0.00012	21.4
TkA01G489040	`PF20922`	Anamorsin_N	56	86	0.13	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94BV5`	Arabidopsis thaliana	sp\|Q94BV5\|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4	38.800%	Swiss-Prot	Medium
`Q9SS04`	Arabidopsis thaliana	sp\|Q9SS04\|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1	38.900%	Swiss-Prot	Medium
`Q9SXD5`	Arabidopsis thaliana	sp\|Q9SXD5\|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3	37.900%	Swiss-Prot	Medium
`Q93Y23`	Arabidopsis thaliana	sp\|Q93Y23\|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4	38.100%	Swiss-Prot	Medium
`Q9C8U0`	Arabidopsis thaliana	sp\|Q9C8U0\|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5	37.100%	Swiss-Prot	Medium

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