TkA01G485190 | RubberDandelionOmics

Gene overview

TkA01G485190

Reference: TK1151 Chr: Chr01 Coordinates: 121448019-121449009 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

912 bp · TkA01G485190|TK1151|cDNA

ATGGTGTTTGGAACTTTTCTCATGGGTGCAATCTTTGTGCTTTCACTTATCTCATCTTGTTGTGCTGCAAACTCGAACCTTTTCCGGGAGTACATTGGTGCTGAATCAGATTCAATCAAGTTATCAGACGTCCCTATAAACCCTAAAGTCGAAGTCCATTTCATCCTAGCATTCGCAATTGATTACACATCAAATAATCATCCAACACCCACCAATGGCAAATTCAATGTTTTTTGGGAAACTAAAAATCTGGGTCCTTC...

CDS

Download CDS FASTA

912 bp · TkA01G485190|TK1151|CDS

ATGGTGTTTGGAACTTTTCTCATGGGTGCAATCTTTGTGCTTTCACTTATCTCATCTTGTTGTGCTGCAAACTCGAACCTTTTCCGGGAGTACATTGGTGCTGAATCAGATTCAATCAAGTTATCAGACGTCCCTATAAACCCTAAAGTCGAAGTCCATTTCATCCTAGCATTCGCAATTGATTACACATCAAATAATCATCCAACACCCACCAATGGCAAATTCAATGTTTTTTGGGAAACTAAAAATCTGGGTCCTTC...

Protein

Download Protein FASTA

303 aa · TkA01G485190|TK1151|PROTEIN

MVFGTFLMGAIFVLSLISSCCAANSNLFREYIGAESDSIKLSDVPINPKVEVHFILAFAIDYTSNNHPTPTNGKFNVFWETKNLGPSEIASIKAKNSNVRVAVSLGGDSFAHDKSNVYFSPKSINSWVENAVSSLTSMIKEYNLDGIDIDYEHFRSSDDVTTFVECIGRLITILKKRKVIKFASIAPYEDNGPVQSHYLALWRKYGHVIDYVNFQFYAYDKLSVSQFVSHFNDQQGSSYRGSQLLASFISKGNLGLPANK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G485190`
TK1151 ID	TkA01G485190
OH-1004 ID	LXL04_002064
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 85.836 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G485190`
Location	Chr01:121448019-121449009 (+)
Description	Similar to Chitinase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002064` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000272 polysaccharide catabolic process Biological Process GO:0005975 carbohydrate metabolic process Biological Process GO:0006032 chitin catabolic process Biological Process GO:0008061 chitin binding Molecular Function GO:0008843 endochitinase activity Molecular Function GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function
KEGG gene cross-reference	gmx:547969 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.853

Rank 1 · TkA01G485190 · TK1151

Cytoplasm0.047

Rank 2 · TkA01G485190 · TK1151

Endoplasmic reticulum0.033

Rank 3 · TkA01G485190 · TK1151

Cell membrane0.031

Rank 4 · TkA01G485190 · TK1151

Lysosome / Vacuole0.029

Rank 5 · TkA01G485190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00704Glyco_hydro_1853-221 aa

PF18433DUF561098-140 aa

PF23916TIM-barrel_EndoS100-234 aa

PF18433DUF5610224-277 aa

PF00704Glyco_hydro_18268-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G485190	`PF00704`	Glyco_hydro_18	53	221	2.3e-14	54.5
TkA01G485190	`PF18433`	DUF5610	98	140	0.038	15.2
TkA01G485190	`PF23916`	TIM-barrel_EndoS	100	234	8.1e-08	33.0
TkA01G485190	`PF18433`	DUF5610	224	277	0.038	15.2
TkA01G485190	`PF00704`	Glyco_hydro_18	268	284	2.3e-14	54.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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