LXL04_002064 | RubberDandelionOmics

Gene overview

LXL04_002064

Reference: OH-1004 Chr: Chr01 Coordinates: 41234469-41235947 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1062 bp · LXL04_002064|LXL04_002064|OH1004|cDNA

ATGGGGGCTGGGTTTGCCCGCATTGTGGAGCTCGAACTCGGGGTGCTCGTTGAAATATTGCGAATCAACTCtgctatatatataattaagcaCTTAATTACAACAATCAACCAAACATCGATCCATATTTCTGTTCATAGTAAAGAAAACATGGTGTTTGGAACTTTTCTCATGGGTGCAATCTTTGTGCTTTCACTTATCTCATCTTGTAGTGCTGCAAACTCGAACCTTTTCCGGGAGTACATTGGTGCTGAATCAGA...

CDS

Download CDS FASTA

1062 bp · LXL04_002064|LXL04_002064|OH1004|CDS

ATGGGGGCTGGGTTTGCCCGCATTGTGGAGCTCGAACTCGGGGTGCTCGTTGAAATATTGCGAATCAACTCTGCTATATATATAATTAAGCACTTAATTACAACAATCAACCAAACATCGATCCATATTTCTGTTCATAGTAAAGAAAACATGGTGTTTGGAACTTTTCTCATGGGTGCAATCTTTGTGCTTTCACTTATCTCATCTTGTAGTGCTGCAAACTCGAACCTTTTCCGGGAGTACATTGGTGCTGAATCAGA...

Protein

Download Protein FASTA

353 aa · LXL04_002064|LXL04_002064|OH1004|PROTEIN

MGAGFARIVELELGVLVEILRINSAIYIIKHLITTINQTSIHISVHSKENMVFGTFLMGAIFVLSLISSCSAANSNLFREYIGAESDSVKLSDVPISPKVEVHFILAFAIDYTSNNHPTPTNGKFNAFWETKNLGPSEIASIKAKNSNVRVAVSLGGDSFAHDKSNVYFSPKSINSWVENAVSSLTSMIKEYNLDGIDIDYEHFRSSDDVTTFVECVGRLITILKKRKVIKFASIAPYEDNGPVQSHYLALWRKYGHVID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002064`
TK1151 ID	TkA01G485190
OH-1004 ID	LXL04_002064
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 85.836 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_002064`
Location	Chr01:41234469-41235947 (-)
Description	Similar to Chitinase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002064` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000272 polysaccharide catabolic process Biological Process GO:0005975 carbohydrate metabolic process Biological Process GO:0006032 chitin catabolic process Biological Process GO:0008061 chitin binding Molecular Function GO:0008843 endochitinase activity Molecular Function GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function
KEGG gene cross-reference	gmx:547969 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.564

Rank 1 · LXL04_002064 · OH-1004

Lysosome / Vacuole0.127

Rank 2 · LXL04_002064 · OH-1004

Cytoplasm0.099

Rank 3 · LXL04_002064 · OH-1004

Endoplasmic reticulum0.083

Rank 4 · LXL04_002064 · OH-1004

Cell membrane0.064

Rank 5 · LXL04_002064 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00704.35Glyco_hydro_18103-271 aa

PF23916.2TIM-barrel_EndoS149-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002064	`PF00704.35`	Glyco_hydro_18	103	271	5.1e-14	53.4
LXL04_002064	`PF23916.2`	TIM-barrel_EndoS	149	284	1.5e-07	32.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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