TkA01G484910 | RubberDandelionOmics

Gene overview

TkA01G484910

Reference: TK1151 Chr: Chr01 Coordinates: 121368947-121372669 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2504 bp · TkA01G484910|TK1151|cDNA

ATCATTTCACTAGGGCTCTAAAACCCTTCCCCACAAAAACGCTGCCAAAACCCTAATCGGAGACTTCAATCTCGGATTTCATTGCGCAGGTTGTAGAATCGAGTATTCGAATTGAAAACACCAATGGGGAAGCTTGGGAAGAAGGCTCGTAAGTTTGCCAAGAAGAATCTCCCTTCCGTGCTCAAACAAAGAAGAAAGAACAAGATTGTTTTCAAGAAAAGACCTTCAAAAAAAGATAACAAAGATGTCGCTGAAAAGGA...

CDS

Download CDS FASTA

2208 bp · TkA01G484910|TK1151|CDS

ATGGGGAAGCTTGGGAAGAAGGCTCGTAAGTTTGCCAAGAAGAATCTCCCTTCCGTGCTCAAACAAAGAAGAAAGAACAAGATTGTTTTCAAGAAAAGACCTTCAAAAAAAGATAACAAAGATGTCGCTGAAAAGGAAGTAGTGAAGACAGCAGAGTTGCCTAAAGGAAGGGACTCTGAGAATGAAGTCACCACCATGACTACTTCACTTGAAGCTTTATTTGCTGAGGATGACAATGTCATGGTTCTAGATGATTCAGA...

Protein

Download Protein FASTA

735 aa · TkA01G484910|TK1151|PROTEIN

MGKLGKKARKFAKKNLPSVLKQRRKNKIVFKKRPSKKDNKDVAEKEVVKTAELPKGRDSENEVTTMTTSLEALFAEDDNVMVLDDSDSDGYLSEDPSSENITGNDNDVTLEDDRDKHTLSVNNQTIYEELAKQKSTLDKLKKKDPKFLKFLENYNKDKISNTQEVVKNHTSIIHFLLSPTKLLKCPLQQYSDEDETMEDLTVLDDSATTTRKLLTSSLINKWTKLVTEDHNDSALTSLVNAYRAACHLGHEETEFTIQDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G484910`
TK1151 ID	TkA01G484910
OH-1004 ID	LXL04_002071
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G484910

Location Chr01:121368947-121372669 (+)

Description Similar to At2g18220: Nucleolar complex protein 2 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55510`	Collaboratively with CYP40/SQN and ULT1, influences floral meristem (FM) determinacy in an AGAMOUS and SUPERMAN-dependent manner, thus contributing to the floral developmental homeostasis.	No verified direct reference in this release
`At2g18220`	Together with SWA2, probably involved in pre-ribosome export from the nucleus to the cytoplasm.	SLOW WALKER2, a NOC1/MAK21 homologue, is essential for coordinated cell cycle progression during female gametophyte development in Arabidopsis.2009 · DOI: 10.1104/pp.109.142414

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0495500`	Nucleolar complex protein 2 homolog.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002071 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0010582 floral meristem determinacy Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0030690 Noc1p-Noc2p complex Cellular Component

GO:0030691 Noc2p-Noc3p complex Cellular Component

GO:0003714 transcription corepressor activity Molecular Function

GO:0042393 histone binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT2G18220

ath:AT3G55510

bta:508638

dosa:Os10g0495500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.921

Rank 1 · TkA01G484910 · TK1151

Cytoplasm0.141

Rank 2 · TkA01G484910 · TK1151

Mitochondrion0.021

Rank 3 · TkA01G484910 · TK1151

Cell membrane0.020

Rank 4 · TkA01G484910 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA01G484910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10241KxDL120-173 aa

PF14567SUKH_5137-165 aa

PF03715Noc2388-681 aa

PF10241KxDL632-647 aa

PF14567SUKH_5645-725 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G484910	`PF10241`	KxDL	120	173	0.58	11.2
TkA01G484910	`PF14567`	SUKH_5	137	165	0.037	14.5
TkA01G484910	`PF03715`	Noc2	388	681	9.5e-87	291.6
TkA01G484910	`PF10241`	KxDL	632	647	0.58	11.2
TkA01G484910	`PF14567`	SUKH_5	645	725	0.037	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WVH0`	Arabidopsis thaliana	sp\|Q0WVH0\|RBLOT_ARATH Protein REBELOTE	44.000%	Swiss-Prot	Medium
`Q9ZPV5`	Arabidopsis thaliana	sp\|Q9ZPV5\|NOC2_ARATH Nucleolar complex-associated protein 2	38.300%	Swiss-Prot	Medium
`Q8LNU5`	Oryza sativa subsp. japonica	sp\|Q8LNU5\|NOC2L_ORYSJ Nucleolar complex protein 2 homolog	33.200%	Swiss-Prot	Medium

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