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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G484410
Reference: TK1151 Chr: Chr01 Coordinates: 121237956-121240724 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2520 bp · TkA01G484410|TK1151|cDNA

TTGCAATACGCCGTCGTATCTGACAATTTACATGGATGTTCGCGTTGGCTAACTTACCATTCGCATTTCAGTATCCCCAAATCACCTCTCACTCCATTCTTCCCTACTGTACAGACCAGAAAGCACTCAGATTACGCTGTAAATTCTTCCAGTTTTCTGCTAAATTATTGGTTTGTAGATCAATCGACAGATGGGCTGTACGCAATCGAAGATCGAGAACGAAGAAATTGTGAATCGGTGCAAGGAAAGGAAAACAGTGA...

CDS

Download CDS FASTA

2214 bp · TkA01G484410|TK1151|CDS

ATGGGCTGTACGCAATCGAAGATCGAGAACGAAGAAATTGTGAATCGGTGCAAGGAAAGGAAAACAGTGATGAAAGAATCAGTATCTGCCCGCAACGCCTTCGCCGCTGCTCACTTCTCCTACGCCGCCGCTTTGAAGAACACCGGCGCTGCGCTTAGCGACTACGCCCAAGGCGAGGTTCAGATTGATCACCGTCATCCGTCCTCTGCTGACGCAGTTTCTTCTTCGACAACCATTCTCCCTCCAGCACCACCACAACC...

Protein

Download Protein FASTA

737 aa · TkA01G484410|TK1151|PROTEIN

MGCTQSKIENEEIVNRCKERKTVMKESVSARNAFAAAHFSYAAALKNTGAALSDYAQGEVQIDHRHPSSADAVSSSTTILPPAPPQPPYETLRPPPPPPLQRASTMPEFPISEPEFKSHPDAIIEEVDEDDEIDDRSLKHRSSSRSGAGRSVSKREAEKEDFPPPSPPQPTPPRPSGNTLNRAAPPPPPSDGISTWDDYFFPSMENVPGSSLAESENERTRFEREEIHRRKVLEEEQRNRSMNNHINHNHVDASHEVEEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G484410
TK1151 IDTkA01G484410
OH-1004 IDLXL04_002085
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G484410
LocationChr01:121237956-121240724 (+)
DescriptionSimilar to REL2: Protein ROLLING AND ERECT LEAF 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g51290 Required for the coordination of cell differentiation and cell elongation in the root tip. No verified direct reference in this release
At3g60320 Required for nitrate signaling.
The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.2016 · DOI: 10.1105/tpc.15.00567

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0562700 Involved in the regulation of leaf shape formation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002085 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010167 response to nitrate Biological Process
GO:0015706 nitrate transmembrane transport Biological Process
GO:0030154 cell differentiation Biological Process
GO:0071249 cellular response to nitrate Biological Process
GO:0071705 nitrogen compound transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G51290
ath:AT3G60320
dosa:Os10g0562700
osa:4349394
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.535
Rank 1 · TkA01G484410 · TK1151
Cytoplasm0.370
Rank 2 · TkA01G484410 · TK1151
Nucleus0.261
Rank 3 · TkA01G484410 · TK1151
Endoplasmic reticulum0.041
Rank 4 · TkA01G484410 · TK1151
Golgi apparatus0.038
Rank 5 · TkA01G484410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04783DUF6301-59 aa
PF27150Rv2240c5-48 aa
PF04782DUF632303-608 aa
PF09286Pro-kuma_activ312-338 aa
PF03938OmpH407-422 aa
PF09769ApoO424-473 aa
PF08696Dna2435-463 aa
PF28557DUF8439480-522 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G484410PF04783DUF6301592.8e-2485.7
TkA01G484410PF27150Rv2240c5480.2112.8
TkA01G484410PF04782DUF6323036084.8e-107358.6
TkA01G484410PF09286Pro-kuma_activ3123380.1812.7
TkA01G484410PF03938OmpH4074220.9910.3
TkA01G484410PF09769ApoO4244730.2212.2
TkA01G484410PF08696Dna24354634.97.5
TkA01G484410PF28557DUF84394805227.37.7
TkA01G484410PF09286Pro-kuma_activ5005600.1812.7
TkA01G484410PF09769ApoO5155490.2212.2
TkA01G484410PF08696Dna25215534.97.5
TkA01G484410PF28557DUF84395806327.37.7
TkA01G484410PF03938OmpH5996960.9910.3
TkA01G484410PF08696Dna26056694.97.5
TkA01G484410PF09769ApoO6186450.2212.2
TkA01G484410PF27150Rv2240c6206480.2112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A0A178VBJ0Arabidopsis thalianasp|A0A178VBJ0|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 130.200%Swiss-ProtMedium
Q93YU8Arabidopsis thalianasp|Q93YU8|NRG2_ARATH Nitrate regulatory gene2 protein30.700%Swiss-ProtMedium
Q9AQW1Oryza sativa subsp. japonicasp|Q9AQW1|REL2_ORYSJ Protein ROLLING AND ERECT LEAF 232.900%Swiss-ProtMedium

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