TkA01G480210 | RubberDandelionOmics

Gene overview

TkA01G480210

Reference: TK1151 Chr: Chr01 Coordinates: 120281322-120282504 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

867 bp · TkA01G480210|TK1151|cDNA

CACGTTGGGTTTACTTTCGCTGAGCTGGAGCTCGCTACCGGTGGATTCTCCCAAGCTAATTTTTTAGCGGAAGGAGGTTTCGGGTCGGTTCACAGAGGTGTCCTGCCCGACGGGCAGGCGGTTGCTGTAAAGCCTAGAACATTAATTAGCAAGTTCCGCAAGGCGATCAGGCGTTTTATTGGGTTTGTTATTGAAGATGGAAGACGATTACTGGTTTATGAGTATATATGTAACGGGTCGTTAGATTCACATCTTTACGG...

CDS

Download CDS FASTA

867 bp · TkA01G480210|TK1151|CDS

CACGTTGGGTTTACTTTCGCTGAGCTGGAGCTCGCTACCGGTGGATTCTCCCAAGCTAATTTTTTAGCGGAAGGAGGTTTCGGGTCGGTTCACAGAGGTGTCCTGCCCGACGGGCAGGCGGTTGCTGTAAAGCCTAGAACATTAATTAGCAAGTTCCGCAAGGCGATCAGGCGTTTTATTGGGTTTGTTATTGAAGATGGAAGACGATTACTGGTTTATGAGTATATATGTAACGGGTCGTTAGATTCACATCTTTACGG...

Protein

Download Protein FASTA

288 aa · TkA01G480210|TK1151|PROTEIN

HVGFTFAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAVAVKPRTLISKFRKAIRRFIGFVIEDGRRLLVYEYICNGSLDSHLYGRHREPLEWAARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLCQKREIYELFFFFFFFFLFIYQVGDFGLARWQPDGDTGEETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEDAIDELMDPRLGNSY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G480210`
TK1151 ID	TkA01G480210
OH-1004 ID	LXL04_002137
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	81.100
Protein coverage (%)	TK1151 92.014 / OH-1004 35.983 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G480210

Location Chr01:120281322-120282504 (-)

Description Similar to SELMODRAFT_444075: Inactive protein kinase SELMODRAFT_444075

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68690`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At1g70460`	Negatively regulates root hair elongation.	No verified direct reference in this release
`At1g26150`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At3g24550`	Proline-rich receptor-like protein kinase PERK1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002137 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0019901 protein kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G26150

ath:AT1G68690

ath:AT3G24550

smo:SELMODRAFT_444075

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.567

Rank 1 · TkA01G480210 · TK1151

Nucleus0.331

Rank 2 · TkA01G480210 · TK1151

Cell membrane0.185

Rank 3 · TkA01G480210 · TK1151

Endoplasmic reticulum0.082

Rank 4 · TkA01G480210 · TK1151

Golgi apparatus0.050

Rank 5 · TkA01G480210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr20-44 aa

PF00069Pkinase20-44 aa

PF03109ABC122-44 aa

PF07714PK_Tyr_Ser-Thr54-222 aa

PF00069Pkinase54-225 aa

PF03109ABC169-136 aa

PF00069Pkinase258-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G480210	`PF07714`	PK_Tyr_Ser-Thr	20	44	1.2e-24	87.7
TkA01G480210	`PF00069`	Pkinase	20	44	1.5e-24	87.6
TkA01G480210	`PF03109`	ABC1	22	44	0.0022	17.9
TkA01G480210	`PF07714`	PK_Tyr_Ser-Thr	54	222	1.2e-24	87.7
TkA01G480210	`PF00069`	Pkinase	54	225	1.5e-24	87.6
TkA01G480210	`PF03109`	ABC1	69	136	0.0022	17.9
TkA01G480210	`PF00069`	Pkinase	258	288	1.5e-24	87.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SX31`	Arabidopsis thaliana	sp\|Q9SX31\|PERK9_ARATH Proline-rich receptor-like protein kinase PERK9	46.000%	Swiss-Prot	Medium
`Q9CAL8`	Arabidopsis thaliana	sp\|Q9CAL8\|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13	45.300%	Swiss-Prot	Medium
`Q9C660`	Arabidopsis thaliana	sp\|Q9C660\|PEK10_ARATH Proline-rich receptor-like protein kinase PERK10	44.200%	Swiss-Prot	Medium
`Q9LV48`	Arabidopsis thaliana	sp\|Q9LV48\|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1	44.300%	Swiss-Prot	Medium

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