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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G474440
Reference: TK1151 Chr: Chr01 Coordinates: 118757858-118761423 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1707 bp · TkA01G474440|TK1151|cDNA

CCCGAGGGCGCTTGTTCTTTCGATCTTTATTCAGTATATTGAAACCCTAACCCCCAAATTCGACACACAATTCAATCAATCTCTAAGGATTATATTCGTGATAAAAAAATGCAACATCAACATCAGAGGTTGAAACAACAACAACAGCAAGCTCTGATGCAGCAAGCTCTCCTTCAACAACAATCTCTATATCATCCTGGCCTCTTAGCACCTCCACAGATTGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGGTTTGA...

CDS

Download CDS FASTA

1269 bp · TkA01G474440|TK1151|CDS

ATGCAACATCAACATCAGAGGTTGAAACAACAACAACAGCAAGCTCTGATGCAGCAAGCTCTCCTTCAACAACAATCTCTATATCATCCTGGCCTCTTAGCACCTCCACAGATTGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGGTTTGATCCAAATACATGCCGCAGTGTGTATGTAGGGAATATTCACATGCAAGTGACCGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTCCTGTTGAAGGCTGCAAACT...

Protein

Download Protein FASTA

422 aa · TkA01G474440|TK1151|PROTEIN

MQHQHQRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPNTCRSVYVGNIHMQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAIVSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDAMLFACFSVYASCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGTSDEKQGSDSKSVVELTNGTSEDGKEPVNSDAPENNPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G474440
TK1151 IDTkA01G474440
OH-1004 IDLXL04_002210
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G474440
LocationChr01:118757858-118761423 (-)
DescriptionSimilar to UBP1B: Oligouridylate-binding protein 1B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17370 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release
At3g14100 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release
At1g54080 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0520300 RNA-binding protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002210 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0034063 stress granule assembly Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G17370
ath:AT1G54080
ath:AT3G14100
dosa:Os08g0520300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.561
Rank 1 · TkA01G474440 · TK1151
Nucleus0.502
Rank 2 · TkA01G474440 · TK1151
Cell membrane0.059
Rank 3 · TkA01G474440 · TK1151
Lysosome / Vacuole0.045
Rank 4 · TkA01G474440 · TK1151
Golgi apparatus0.030
Rank 5 · TkA01G474440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23085RRM_PARP14_355-126 aa
PF16367RRM_756-82 aa
PF09707Cas_Cas2CT197857-96 aa
PF00076RRM_158-124 aa
PF16842RRM_occluded58-125 aa
PF22976RRM_1061-115 aa
PF13893RRM_566-126 aa
PF14703PHM7_cyt88-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G474440PF23085RRM_PARP14_3551265.6e-0523.9
TkA01G474440PF16367RRM_756826e-0523.7
TkA01G474440PF09707Cas_Cas2CT197857960.03814.8
TkA01G474440PF00076RRM_1581242.1e-47159.6
TkA01G474440PF16842RRM_occluded581250.002518.4
TkA01G474440PF22976RRM_10611151.5e-0525.8
TkA01G474440PF13893RRM_5661260.0002721.3
TkA01G474440PF14703PHM7_cyt881100.1912.6
TkA01G474440PF16367RRM_71422006e-0523.7
TkA01G474440PF09707Cas_Cas2CT19781421900.03814.8
TkA01G474440PF00076RRM_11432132.1e-47159.6
TkA01G474440PF23085RRM_PARP14_31431645.6e-0523.9
TkA01G474440PF13893RRM_51472150.0002721.3
TkA01G474440PF22976RRM_101501991.5e-0525.8
TkA01G474440PF14703PHM7_cyt1792030.1912.6
TkA01G474440PF08206OB_RNB1791890.2511.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQI9Arabidopsis thalianasp|Q9LQI9|UBP1B_ARATH Oligouridylate-binding protein 1B79.900%Swiss-ProtHigh
Q9LJH8Arabidopsis thalianasp|Q9LJH8|UBP1C_ARATH Oligouridylate-binding protein 1C76.800%Swiss-ProtHigh
Q9SYG4Arabidopsis thalianasp|Q9SYG4|UBP1A_ARATH Oligouridylate-binding protein 1A74.300%Swiss-ProtHigh
Q6YZW2Oryza sativa subsp. japonicasp|Q6YZW2|RB208_ORYSJ RNA-binding protein 20863.300%Swiss-ProtHigh

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