TkA01G461740 | RubberDandelionOmics

Gene overview

TkA01G461740

Reference: TK1151 Chr: Chr01 Coordinates: 115717874-115718508 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

549 bp · TkA01G461740|TK1151|cDNA

ATGAGGAAAACTGCAGCCGCTAAGAAGGTTGCACCATCAGGAAGTCCATGGTACGGTCCTGAGCGTGTGAAGTACCTGGGCCCATTCTCCAGTGAAGCCCCATCATACTTGACCGGTGAGTTCCCAGGTGACTACGGGTGGGACACCGCTGGGCTTTCAGCAGATCCAGAGACATTTGCAAAGAACCGCGAGCTTGAGGTGATCCACTGCAGATGGGCCATGCTTGGAGCTCTTGGGTGTGTCTTCCCGGAGCTCTTGGC...

CDS

Download CDS FASTA

549 bp · TkA01G461740|TK1151|CDS

ATGAGGAAAACTGCAGCCGCTAAGAAGGTTGCACCATCAGGAAGTCCATGGTACGGTCCTGAGCGTGTGAAGTACCTGGGCCCATTCTCCAGTGAAGCCCCATCATACTTGACCGGTGAGTTCCCAGGTGACTACGGGTGGGACACCGCTGGGCTTTCAGCAGATCCAGAGACATTTGCAAAGAACCGCGAGCTTGAGGTGATCCACTGCAGATGGGCCATGCTTGGAGCTCTTGGGTGTGTCTTCCCGGAGCTCTTGGC...

Protein

Download Protein FASTA

182 aa · TkA01G461740|TK1151|PROTEIN

MRKTAAAKKVAPSGSPWYGPERVKYLGPFSSEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEGDQEWKTCHVLHVWLLCSSHCHRKGPIREPS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G461740`
TK1151 ID	TkA01G461740
OH-1004 ID	LXL04_002490
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 82.967 / OH-1004 56.767 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G461740`
Location	Chr01:115717874-115718508 (-)
Description	Similar to CAB16: Chlorophyll a-b binding protein 16, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002490` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009416 response to light stimulus Biological Process GO:0009765 photosynthesis, light harvesting Biological Process GO:0009768 photosynthesis, light harvesting in photosystem I Biological Process GO:0009522 photosystem I Cellular Component GO:0009523 photosystem II Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0016168 chlorophyll binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	nta:107764358 nta:107773232 sly:108491835 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966

Rank 1 · TkA01G461740 · TK1151

Mitochondrion0.064

Rank 2 · TkA01G461740 · TK1151

Cytoplasm0.029

Rank 3 · TkA01G461740 · TK1151

Nucleus0.014

Rank 4 · TkA01G461740 · TK1151

Peroxisome0.013

Rank 5 · TkA01G461740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00504Chloroa_b-bind33-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G461740	`PF00504`	Chloroa_b-bind	33	148	1.4e-29	104.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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